NC_066023.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066023.1 Tanacetum parthenium isolate BPTPS077 voucher LISE:96403 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150154
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
225--275 26 1.9 26 84 4 66 37 0 1 60 1.08
249--297 19 2.5 20 83 9 66 53 0 0 46 1.00
304--331 14 2.0 14 100 0 56 35 0 28 35 1.58
6368--6395 14 2.0 14 100 0 56 42 7 7 42 1.59
16047--16087 21 2.0 21 95 0 73 34 9 24 31 1.88
17482--17517 17 2.1 17 100 0 72 16 19 5 58 1.58
18571--18602 16 2.0 16 100 0 64 25 6 0 68 1.12
26423--26477 27 2.0 27 96 0 101 34 16 10 38 1.84
30658--30707 16 3.1 16 91 5 66 72 10 6 12 1.28
30941--30975 15 2.3 15 90 0 52 37 14 14 34 1.86
34982--35017 15 2.4 15 100 0 72 19 0 19 61 1.35
36811--36844 17 2.0 17 100 0 68 11 17 0 70 1.16
50870--50910 20 2.0 20 100 0 82 24 9 0 65 1.22
51135--51169 18 1.9 18 88 11 54 45 2 5 45 1.41
57560--57584 12 2.1 12 100 0 50 24 8 8 60 1.52
76976--77018 21 2.1 21 95 4 79 32 0 9 58 1.30
77563--77594 16 2.0 16 100 0 64 6 25 0 68 1.12
77612--77644 15 2.2 15 89 10 50 24 9 9 57 1.58
80661--80722 4 16.5 4 85 6 60 59 0 0 40 0.97
80650--80717 22 3.0 24 81 12 90 58 1 0 39 1.07
80650--80752 24 4.2 25 78 19 94 61 0 0 37 1.03
80667--80721 14 3.9 14 77 17 69 61 0 0 38 0.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
80663--80744 18 5.1 17 78 19 88 60 0 0 39 0.96
80659--80742 8 10.6 8 75 22 72 60 0 0 39 0.97
80676--80751 8 10.3 7 77 17 66 63 0 0 36 0.95
80652--80751 45 2.3 44 79 20 113 61 1 0 38 1.03
89509--89573 9 7.2 9 75 0 67 29 7 26 36 1.84
89510--89586 18 4.3 18 96 0 136 29 9 25 35 1.87
105170--105231 32 1.9 32 96 0 115 41 20 8 29 1.81
109719--109770 25 2.0 26 96 3 97 67 0 17 15 1.24
116394--116429 18 2.0 18 100 0 72 55 16 0 27 1.42
124874--124962 45 2.0 45 84 0 115 29 15 8 46 1.77
127663--127724 32 1.9 32 96 0 115 29 8 20 41 1.81
143308--143384 18 4.3 18 96 0 136 35 25 9 29 1.87
143321--143385 9 7.2 9 75 0 67 36 26 7 29 1.84
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Tables: 1
The End!