NC_066024.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_066024.1 Artemisia absinthium isolate BPTPS078 voucher LISE:96404 chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  151283

    Tables:   1   

    This is table  1  of  1  ( 31 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  4643--4687                         22       2.0      22          100       0         90      60   13   17   8    1.58

  6382--6409                         14       2.0      14          100       0         56      42   7    7    42   1.59

  16070--16110                       21       2.0      21          95        0         73      34   9    24   31   1.88

  16798--16863                       33       2.0      33          100       0         132     15   30   3    51   1.58

  17539--17574                       17       2.1      17          100       0         72      16   19   5    58   1.58

  18680--18710                       14       2.3      13          94        5         53      67   0    0    32   0.91

  24468--24511                       22       2.0      22          100       0         88      27   0    4    68   1.09

  26622--26671                       24       2.1      24          96        0         91      32   18   14   36   1.90

  31119--31153                       15       2.3      15          90        0         52      37   14   14   34   1.86

  32639--32694                       28       2.0      28          100       0         112     50   10   0    39   1.37

  35221--35256                       15       2.4      15          86        13        56      19   0    19   61   1.35

  36734--36778                       13       3.7      13          74        17        51      46   2    20   31   1.62

  36730--36775                       23       2.0      23          95        0         83      47   2    17   32   1.60

  37071--37104                       17       2.0      17          100       0         68      11   17   0    70   1.16

  52550--52583                       17       2.0      17          94        0         59      44   5    20   29   1.75

  52805--52847                       22       2.0      22          90        4         70      18   6    25   48   1.73

  53040--53131                       26       3.3      26          71        14        85      33   9    2    54   1.46

  53039--53152                       57       2.0      57          98        0         219     35   10   2    50   1.51

  57917--57941                       12       2.1      12          100       0         50      24   8    8    60   1.52

  77924--77971                       15       3.3      15          91        2         80      25   10   10   54   1.66

  90202--90276                       18       4.4      17          88        8         73      29   8    25   37   1.84

  90213--90276                       9        7.1      9           74        0         65      29   7    26   35   1.85

  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  90212--90289                       18       4.3      18          96        0         138     29   10   25   34   1.89

  97868--97916                       10       4.5      10          76        18        53      40   6    2    51   1.38

  97858--97921                       24       2.6      25          90        9         105     40   4    4    50   1.44

  105903--105964                     32       1.9      32          96        0         115     41   20   8    29   1.81

  128302--128363                     32       1.9      32          96        0         115     29   8    20   41   1.81

  136350--136398                     10       4.5      10          76        18        53      51   2    6    40   1.38

  143977--144054                     18       4.3      18          96        0         138     34   25   10   29   1.89

  143977--144054                     9        8.7      9           71        0         66      34   25   10   29   1.89

  144026--144064                     18       2.4      16          87        12        53      41   23   5    30   1.76
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!