NC_066024.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066024.1 Artemisia absinthium isolate BPTPS078 voucher LISE:96404 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151283
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4643--4687 22 2.0 22 100 0 90 60 13 17 8 1.58
6382--6409 14 2.0 14 100 0 56 42 7 7 42 1.59
16070--16110 21 2.0 21 95 0 73 34 9 24 31 1.88
16798--16863 33 2.0 33 100 0 132 15 30 3 51 1.58
17539--17574 17 2.1 17 100 0 72 16 19 5 58 1.58
18680--18710 14 2.3 13 94 5 53 67 0 0 32 0.91
24468--24511 22 2.0 22 100 0 88 27 0 4 68 1.09
26622--26671 24 2.1 24 96 0 91 32 18 14 36 1.90
31119--31153 15 2.3 15 90 0 52 37 14 14 34 1.86
32639--32694 28 2.0 28 100 0 112 50 10 0 39 1.37
35221--35256 15 2.4 15 86 13 56 19 0 19 61 1.35
36734--36778 13 3.7 13 74 17 51 46 2 20 31 1.62
36730--36775 23 2.0 23 95 0 83 47 2 17 32 1.60
37071--37104 17 2.0 17 100 0 68 11 17 0 70 1.16
52550--52583 17 2.0 17 94 0 59 44 5 20 29 1.75
52805--52847 22 2.0 22 90 4 70 18 6 25 48 1.73
53040--53131 26 3.3 26 71 14 85 33 9 2 54 1.46
53039--53152 57 2.0 57 98 0 219 35 10 2 50 1.51
57917--57941 12 2.1 12 100 0 50 24 8 8 60 1.52
77924--77971 15 3.3 15 91 2 80 25 10 10 54 1.66
90202--90276 18 4.4 17 88 8 73 29 8 25 37 1.84
90213--90276 9 7.1 9 74 0 65 29 7 26 35 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
90212--90289 18 4.3 18 96 0 138 29 10 25 34 1.89
97868--97916 10 4.5 10 76 18 53 40 6 2 51 1.38
97858--97921 24 2.6 25 90 9 105 40 4 4 50 1.44
105903--105964 32 1.9 32 96 0 115 41 20 8 29 1.81
128302--128363 32 1.9 32 96 0 115 29 8 20 41 1.81
136350--136398 10 4.5 10 76 18 53 51 2 6 40 1.38
143977--144054 18 4.3 18 96 0 138 34 25 10 29 1.89
143977--144054 9 8.7 9 71 0 66 34 25 10 29 1.89
144026--144064 18 2.4 16 87 12 53 41 23 5 30 1.76
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Tables: 1
The End!