NC_066143.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066143.1 Hibiscus mutabilis cultivar Danbanbai chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160880
Tables: 1
This is table 1 of 1 ( 113 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86--126 14 2.9 14 88 0 64 29 14 4 51 1.63
5075--5147 3 24.7 3 77 15 55 30 0 0 69 0.88
5068--5149 26 3.2 26 83 14 116 28 0 0 71 0.86
5069--5184 52 2.2 54 86 6 157 24 1 1 72 1.03
5151--5205 12 4.8 12 71 15 53 18 3 5 72 1.18
5151--5204 23 2.3 24 81 9 67 16 3 5 74 1.16
6907--6940 17 2.0 17 94 0 59 58 8 5 26 1.51
6991--7024 17 2.0 17 94 0 59 47 20 11 20 1.81
7389--7413 12 2.1 12 100 0 50 60 0 16 24 1.36
8720--8760 21 2.0 21 90 0 64 36 12 7 43 1.70
9010--9035 13 2.0 13 100 0 52 53 7 7 30 1.57
13983--14028 22 2.1 22 100 0 92 45 4 4 45 1.43
14082--14123 21 2.0 21 95 0 75 69 7 4 19 1.31
17593--17660 34 2.0 34 100 0 136 50 14 0 35 1.44
28255--28298 21 2.1 21 100 0 88 40 18 0 40 1.50
28566--28599 11 3.1 11 91 8 52 64 2 0 32 1.08
30254--30285 13 2.4 14 85 15 50 56 6 12 25 1.59
32951--32990 14 3.0 14 89 7 57 70 12 5 12 1.33
33254--33295 21 2.0 21 100 0 84 57 9 0 33 1.31
33464--33507 20 2.2 20 96 4 81 43 6 4 45 1.51
34707--34737 13 2.4 13 100 0 62 54 12 16 16 1.71
37990--38028 19 2.1 19 100 0 78 33 10 5 51 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38751--38807 16 3.9 16 76 17 61 59 0 0 40 0.97
38802--38856 11 4.9 11 79 16 51 61 0 10 27 1.29
38811--38845 16 2.2 16 90 10 54 62 0 8 28 1.24
39273--39307 9 4.0 9 92 7 63 34 8 11 45 1.71
39274--39307 17 2.0 17 100 0 68 35 5 11 47 1.65
44601--44631 15 2.1 15 100 0 62 19 12 0 67 1.22
45184--45213 14 2.1 14 100 0 60 36 6 0 56 1.26
45318--45356 18 2.2 18 86 4 53 64 0 12 23 1.28
45384--45410 13 2.1 13 100 0 54 29 14 7 48 1.71
47314--47347 17 2.0 17 88 11 52 70 0 11 17 1.16
47981--48022 21 2.0 21 100 0 84 23 19 9 47 1.78
48987--49039 14 3.7 13 77 20 52 81 0 3 15 0.83
48994--49032 17 2.3 17 86 0 51 82 0 2 15 0.79
48990--49094 30 3.4 29 78 11 77 70 0 4 23 1.12
49041--49075 18 2.0 18 88 5 54 62 2 0 34 1.10
49113--49141 14 2.1 14 100 0 58 65 0 0 34 0.93
49658--49705 12 4.0 12 97 0 87 39 16 2 41 1.60
49712--49740 15 1.9 15 100 0 58 58 0 6 34 1.25
51531--51578 13 3.5 13 76 23 53 18 2 2 77 0.97
51532--51578 9 5.1 9 79 20 53 19 2 2 76 0.99
51547--51584 20 2.0 20 89 5 60 15 5 2 76 1.08
54188--54221 13 2.7 13 95 4 61 38 5 0 55 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54402--54435 9 3.9 9 88 7 52 23 5 0 70 1.09
54406--54470 20 3.3 20 70 21 57 26 7 0 66 1.19
54452--54510 13 4.8 13 81 10 61 33 5 0 61 1.18
54457--54543 2 46.5 2 69 13 51 36 3 0 59 1.14
54490--54546 16 3.7 16 80 20 68 38 0 0 61 0.96
54452--54545 29 3.2 29 85 11 113 35 3 0 61 1.12
54606--54649 22 2.0 22 100 0 88 40 27 9 22 1.84
58740--58772 16 2.1 16 100 0 66 30 12 0 57 1.35
58780--58827 14 3.6 14 74 25 50 41 4 2 52 1.32
58835--58902 12 5.2 12 75 16 55 44 0 0 55 0.99
58898--58965 10 7.1 10 75 17 56 26 4 0 69 1.07
58809--58965 39 4.0 38 73 19 110 35 2 0 62 1.09
63512--63545 17 2.0 17 88 0 50 38 2 11 47 1.55
63543--63579 14 2.6 14 100 0 74 51 5 5 37 1.48
65223--65249 13 2.1 13 100 0 54 62 0 7 29 1.22
67444--67496 26 2.0 26 92 0 88 35 11 22 30 1.89
68015--68039 13 1.9 13 100 0 50 52 0 0 48 1.00
72205--72316 16 6.8 16 72 16 61 37 0 0 61 1.02
72228--72303 3 24.3 3 71 26 52 39 0 0 60 0.97
72223--72307 22 4.2 20 81 15 102 40 0 0 60 0.97
72229--72317 22 4.0 21 79 17 92 40 1 0 58 1.05
72204--72301 32 3.4 30 75 19 86 36 0 0 63 0.95
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
72205--72307 54 1.9 54 84 11 140 37 0 0 62 0.96
72204--72312 14 8.0 14 70 23 81 37 0 0 61 1.02
72225--72312 29 3.0 29 79 17 101 39 1 0 59 1.05
72495--72533 21 1.9 21 94 5 71 30 25 10 33 1.89
75798--75835 16 2.5 15 84 12 51 28 18 0 52 1.45
75801--75833 16 2.1 16 94 0 57 27 21 0 51 1.48
76890--76984 46 2.1 46 100 0 190 35 18 16 28 1.93
87048--87085 10 3.6 11 79 13 53 73 0 5 21 1.02
87041--87086 20 2.3 20 96 0 83 67 0 4 28 1.10
88998--89050 17 3.1 17 94 5 97 52 5 0 41 1.25
89363--89399 14 2.6 15 87 12 60 48 0 0 51 1.00
90009--90039 14 2.2 14 100 0 62 29 12 6 51 1.65
91313--91360 24 2.0 24 100 0 96 33 20 12 33 1.90
94230--94298 21 3.3 21 87 2 95 11 24 8 55 1.64
96655--96726 18 4.2 18 85 5 96 30 9 25 34 1.88
96667--96725 9 6.6 9 78 0 55 30 11 27 30 1.92
99349--99391 20 2.0 20 91 8 68 51 0 4 44 1.22
104597--104663 17 4.1 17 83 12 77 20 11 4 62 1.46
104633--104660 14 2.0 14 100 0 56 14 14 0 71 1.15
104658--104718 11 5.5 11 82 9 72 34 1 14 49 1.54
112865--112926 32 1.9 32 96 0 115 38 22 9 29 1.86
113675--113707 15 2.3 14 94 5 57 33 3 6 57 1.38
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114143--114177 17 2.1 17 94 0 61 45 11 20 22 1.82
115711--115754 21 2.1 21 83 8 54 70 4 4 20 1.23
117296--117337 20 2.0 20 82 13 50 54 21 2 21 1.56
118381--118433 21 2.5 21 90 6 81 22 7 1 67 1.25
118392--118436 20 2.2 21 92 4 74 26 11 0 62 1.29
119014--119053 20 2.0 20 100 0 80 20 5 15 60 1.53
121420--121452 17 1.9 17 100 0 66 24 12 0 63 1.28
130900--130936 18 2.1 18 100 0 74 10 16 16 56 1.66
131588--131624 18 2.1 18 94 0 65 18 10 13 56 1.66
133347--133376 15 2.0 15 100 0 60 40 13 13 33 1.83
136055--136089 17 2.1 17 94 0 61 22 20 11 45 1.82
136525--136557 15 2.3 14 94 5 57 57 6 3 33 1.38
137306--137367 32 1.9 32 96 0 115 29 9 22 38 1.86
145514--145574 11 5.5 11 82 9 72 49 14 1 34 1.54
145514--145575 27 2.2 28 88 5 99 50 14 1 33 1.53
145572--145599 14 2.0 14 100 0 56 71 0 14 14 1.15
145569--145635 17 4.1 17 83 12 77 62 4 11 20 1.46
150841--150883 20 2.0 22 91 8 72 44 4 0 51 1.22
153506--153565 9 6.7 9 76 0 57 31 26 11 30 1.92
153506--153577 18 4.2 18 85 5 96 34 25 9 30 1.88
155934--156022 21 4.1 21 84 5 90 53 10 23 12 1.68
155934--156002 21 3.3 21 87 2 95 55 8 24 11 1.64
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
158872--158919 24 2.0 24 100 0 96 33 12 20 33 1.90
160193--160223 14 2.2 14 100 0 62 51 6 12 29 1.65
160833--160869 14 2.6 15 87 12 60 51 0 0 48 1.00
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Tables: 1
The End!