NC_066435.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_066435.1 Piper betle chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161359
Tables: 1
This is table 1 of 1 ( 51 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1950--1984 18 1.9 18 100 0 70 28 8 22 40 1.84
4537--4570 14 2.4 15 85 14 54 79 0 0 20 0.73
5272--5307 18 2.0 18 100 0 72 27 11 16 44 1.82
6454--6479 13 2.0 13 100 0 52 23 15 7 53 1.67
6960--7004 21 2.1 21 83 0 54 44 4 13 37 1.64
12252--12284 16 2.1 16 100 0 66 39 18 0 42 1.50
28221--28247 13 2.1 13 100 0 54 51 25 14 7 1.68
32154--32207 25 2.2 25 100 0 108 46 9 7 37 1.64
34562--34616 27 2.0 28 89 3 85 43 5 7 43 1.55
37638--37662 12 2.1 12 100 0 50 24 8 0 68 1.16
49305--49353 24 2.3 21 83 16 57 44 8 8 38 1.64
49299--49346 24 2.0 24 100 0 96 45 8 8 37 1.64
52358--52388 15 2.1 15 93 0 53 38 12 22 25 1.90
53835--53863 13 2.2 13 100 0 58 37 0 13 48 1.43
53854--53878 9 2.8 9 100 0 50 44 0 12 44 1.41
60466--60512 23 2.0 23 100 0 94 31 12 0 55 1.38
60504--60549 23 2.0 23 100 0 92 52 0 4 43 1.21
60781--60822 21 2.0 21 100 0 84 33 28 4 33 1.78
60785--60835 21 2.5 21 87 3 68 35 25 1 37 1.67
64966--64998 16 2.1 16 100 0 66 33 0 18 48 1.48
69504--69555 17 3.1 17 97 0 95 34 17 0 48 1.48
69569--69623 10 5.3 10 82 8 65 60 1 7 30 1.35
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69559--69623 22 3.0 22 73 20 66 60 1 7 30 1.34
79877--79918 17 2.5 17 88 7 59 69 2 4 23 1.20
79876--79918 16 2.5 18 81 11 54 69 2 4 23 1.18
87118--87155 20 1.9 20 100 0 76 34 7 10 47 1.67
87192--87217 13 2.0 13 100 0 52 30 15 23 30 1.95
91552--91582 15 2.1 15 100 0 62 19 32 0 48 1.49
93824--93907 24 3.6 24 87 9 138 14 22 11 51 1.75
93824--93915 45 2.1 45 93 2 159 13 23 10 52 1.71
96302--96379 15 4.7 17 70 15 65 34 7 24 33 1.84
96298--96373 24 3.2 24 98 0 143 35 7 22 34 1.83
104089--104143 6 10.0 6 79 18 50 30 16 0 52 1.44
104089--104167 36 2.2 36 86 6 106 31 15 0 53 1.42
104089--104151 20 3.3 20 72 22 55 31 15 0 52 1.44
104145--104178 16 2.1 16 100 0 68 29 11 0 58 1.33
104138--104185 23 2.0 23 88 4 69 31 12 0 56 1.37
105067--105103 14 2.6 14 95 0 65 32 13 0 54 1.40
118356--118386 14 2.2 14 100 0 62 70 0 6 22 1.09
124468--124510 22 2.0 22 85 0 59 55 4 20 18 1.60
132590--132614 12 2.1 12 100 0 50 24 8 0 68 1.16
145272--145308 14 2.6 14 95 0 65 54 0 13 32 1.40
146197--146230 16 2.1 16 100 0 68 58 0 11 29 1.33
146190--146237 24 2.0 23 88 4 69 56 0 12 31 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146232--146286 6 10.0 6 79 18 50 52 0 16 30 1.44
146224--146286 20 3.3 20 70 24 55 52 0 15 31 1.44
146208--146286 37 2.2 36 86 6 106 53 0 15 31 1.42
154002--154077 24 3.2 24 98 0 143 34 22 7 35 1.83
156468--156551 24 3.6 24 87 9 138 51 11 22 14 1.75
156460--156551 45 2.1 44 93 2 157 52 10 23 13 1.71
158793--158823 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!