NC_066811.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_066811.1 Euphorbia prostrata chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 162858 Tables: 1 2 This is table 1 of 2 ( 175 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 199--236 19 2.0 19 100 0 76 42 10 5 42 1.62 222--248 13 2.1 13 100 0 54 48 14 0 37 1.45 4920--4946 13 2.1 13 100 0 54 48 7 0 44 1.31 5166--5251 28 3.1 28 100 0 172 24 6 3 65 1.34 5377--5483 12 8.8 12 74 14 67 35 5 2 56 1.38 5388--5448 8 8.0 8 75 13 58 34 4 1 59 1.29 5325--5472 51 3.0 49 76 20 137 37 6 4 52 1.45 5433--5466 17 2.0 17 100 0 68 29 11 0 58 1.33 5456--5493 18 2.1 18 100 0 76 44 5 5 44 1.49 5794--5828 15 2.3 15 85 0 52 74 5 2 17 1.14 5864--5906 20 2.1 20 87 12 61 79 2 9 9 1.03 5864--5906 10 4.3 10 82 8 52 79 2 9 9 1.03 6964--7005 10 4.3 10 77 17 52 76 0 0 23 0.79 6972--7014 21 2.2 18 88 12 59 72 0 0 27 0.85 6933--7010 16 5.2 15 83 11 88 67 3 0 28 1.07 8004--8039 18 2.0 18 100 0 72 38 5 11 44 1.63 8032--8089 18 3.2 18 70 20 50 62 1 15 20 1.42 8266--8297 16 2.0 16 100 0 64 50 0 12 37 1.41 8423--8454 8 4.1 8 92 8 57 62 0 12 25 1.30 8424--8453 15 2.0 15 100 0 60 66 0 13 20 1.24 8569--8605 7 5.6 7 87 12 60 24 0 0 75 0.80 8562--8605 13 3.1 15 87 12 51 25 2 0 72 0.96 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 8569--8605 13 2.8 13 100 0 74 24 0 0 75 0.80 8600--8636 18 2.1 18 100 0 74 56 0 5 37 1.22 8648--8686 20 2.0 20 89 0 60 56 0 15 28 1.40 9973--10056 28 3.0 28 100 0 168 35 10 0 53 1.36 10059--10089 15 2.1 15 93 0 53 45 0 0 54 0.99 10058--10118 9 7.3 9 80 10 60 47 1 1 49 1.21 10228--10259 11 2.9 11 95 0 55 28 9 12 50 1.71 10347--10377 15 2.1 15 100 0 62 51 0 0 48 1.00 10609--10677 23 2.8 24 76 14 70 30 5 1 62 1.27 10695--10728 15 2.3 15 94 0 59 23 5 0 70 1.09 22490--22534 23 2.0 23 100 0 90 44 8 13 33 1.75 28958--28992 18 1.9 18 88 0 52 34 2 11 51 1.53 30324--30352 15 1.9 15 100 0 58 79 0 6 13 0.93 30677--30703 13 2.1 13 100 0 54 14 0 25 59 1.36 30860--30905 15 3.1 15 84 9 58 45 4 8 41 1.55 31388--31422 17 2.1 17 94 0 61 20 8 17 54 1.68 32720--32758 15 2.8 13 82 14 51 38 0 5 56 1.22 32728--32758 15 2.1 15 100 0 62 32 0 6 61 1.21 32747--32788 21 2.0 21 100 0 84 42 9 0 47 1.36 33050--33099 15 3.1 15 83 13 55 44 4 8 44 1.52 33082--33126 22 2.0 22 91 0 72 42 6 6 44 1.57 33656--33709 27 2.0 27 85 0 72 46 11 7 35 1.67 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 33976--34023 25 1.9 25 86 0 69 64 4 20 10 1.41 36873--36992 60 2.0 60 100 0 240 30 16 6 46 1.73 37920--37971 24 2.2 24 85 0 68 38 3 0 57 1.17 37933--37971 12 3.2 12 96 0 69 35 5 0 58 1.20 38352--38379 13 2.2 13 100 0 56 53 7 7 32 1.55 38464--38513 25 2.0 25 84 7 66 24 6 4 66 1.32 38503--38541 20 2.0 20 94 0 69 48 0 12 38 1.42 38633--38684 16 3.2 16 76 13 52 55 1 5 36 1.35 38659--38703 23 1.9 24 90 4 74 55 0 2 42 1.12 38735--38759 8 3.1 8 100 0 50 64 0 0 36 0.94 38922--38961 20 2.0 20 100 0 80 40 10 0 50 1.36 38958--38991 16 2.1 16 88 0 50 29 0 11 58 1.33 44875--44909 17 2.1 17 94 0 61 48 2 0 48 1.16 45132--45184 18 3.1 17 84 12 65 37 0 1 60 1.08 45167--45197 12 2.7 12 95 5 55 32 0 6 61 1.21 45188--45222 17 2.1 17 100 0 70 22 5 0 71 1.07 45217--45250 11 3.2 11 91 4 52 29 8 0 61 1.26 45297--45372 16 4.5 17 78 15 77 39 0 3 56 1.18 45324--45372 7 7.0 7 75 25 50 40 0 2 57 1.10 45331--45449 28 4.3 28 73 19 81 33 3 1 61 1.22 45375--45431 30 1.9 30 88 0 87 28 5 1 64 1.25 45389--45413 12 2.1 12 100 0 50 32 8 0 60 1.26 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 45395--45448 18 2.9 18 91 5 81 29 5 0 64 1.16 45478--45524 20 2.2 21 92 7 78 34 6 4 55 1.45 45476--45525 21 2.2 24 80 20 72 36 6 4 54 1.44 45485--45530 20 2.3 21 88 7 69 39 6 4 50 1.48 49033--49065 10 3.3 10 100 0 66 54 18 9 18 1.69 49169--49205 19 1.9 19 100 0 74 54 10 0 35 1.36 49204--49230 12 2.2 12 100 0 54 48 0 22 29 1.51 50291--50317 14 1.9 14 100 0 54 51 0 18 29 1.46 50344--50392 21 2.4 20 93 3 80 8 12 0 79 0.93 50394--50432 19 2.1 19 100 0 78 30 10 0 58 1.31 51498--51547 21 2.4 21 90 6 75 50 8 16 26 1.72 53778--53863 37 2.3 37 76 9 86 27 6 3 61 1.38 53927--53954 13 2.2 13 100 0 56 32 7 0 60 1.24 53950--54004 23 2.7 19 75 20 56 32 10 3 52 1.54 53953--53999 23 2.0 23 95 0 85 36 10 4 48 1.57 53992--54049 12 4.9 12 91 4 91 22 10 0 67 1.21 53992--54049 23 2.5 24 88 2 91 22 10 0 67 1.21 53995--54069 35 2.2 34 83 9 91 26 8 0 65 1.20 54078--54112 17 2.1 17 94 0 61 31 2 11 54 1.51 54105--54139 16 2.2 16 94 0 61 45 2 0 51 1.16 54174--54227 11 4.5 11 78 17 54 24 1 1 72 1.05 54151--54237 26 3.4 25 80 13 81 27 2 1 68 1.08 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 54208--54237 15 2.0 15 100 0 60 33 0 0 66 0.92 54192--54241 25 2.0 26 92 4 84 32 0 2 66 1.03 62618--62644 13 2.1 13 100 0 54 14 22 0 62 1.31 62917--62951 17 2.1 17 100 0 70 51 5 0 42 1.25 62960--63001 21 2.0 21 95 0 75 45 7 9 38 1.64 63062--63162 19 5.6 18 77 12 75 55 0 3 39 1.25 63116--63155 19 2.1 19 100 0 80 62 0 5 32 1.17 63179--63230 27 1.9 27 92 0 86 55 3 13 26 1.55 63259--63329 27 2.6 27 90 0 106 42 1 0 56 1.08 63263--63328 16 4.5 16 78 16 72 39 1 0 59 1.07 63261--63312 11 5.3 11 72 25 53 44 0 0 55 0.99 63309--63387 20 4.4 18 80 16 76 40 2 1 55 1.21 63321--63424 16 6.5 16 76 12 90 46 0 0 51 1.13 63323--63389 33 1.9 35 85 8 93 43 1 1 53 1.19 63261--63408 27 5.5 28 74 17 100 43 1 0 54 1.13 63385--63425 19 2.2 19 100 0 82 51 0 0 48 1.00 63458--63493 18 1.9 19 88 5 56 66 0 8 25 1.19 63585--63618 13 2.7 12 86 13 50 55 8 2 32 1.45 63697--63733 15 2.4 16 95 4 67 54 2 5 37 1.38 63862--63895 16 2.1 16 100 0 68 55 5 0 38 1.24 63866--63901 16 2.2 16 90 0 54 63 2 0 33 1.08 68322--68347 13 2.0 13 100 0 52 23 15 15 46 1.83 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 70512--70536 12 2.1 12 100 0 50 44 0 8 48 1.32 70556--70602 16 3.0 16 84 9 62 48 2 2 46 1.25 70574--70617 14 3.0 14 86 6 52 43 2 0 54 1.12 70771--70801 13 2.4 13 100 0 62 51 0 0 48 1.00 71462--71500 14 2.8 14 92 0 60 41 0 15 43 1.46 73326--73366 18 2.3 18 95 0 73 48 4 7 39 1.52 73364--73395 16 2.0 16 93 0 55 53 3 6 37 1.42 73455--73498 22 1.9 22 86 9 61 38 15 2 43 1.60 73759--73808 24 2.1 24 92 0 82 66 0 4 30 1.10 75137--75185 17 3.2 16 81 13 59 71 2 8 18 1.21 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2