NC_067573.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067573.1 Helwingia japonica chloroplast, complete sequence
Parameters: 2 7 7 80 10 50 500
Length: 158469
Tables: 1
This is table 1 of 1 ( 36 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6626--6663 16 2.4 16 86 4 51 44 2 0 52 1.14
6664--6693 13 2.3 13 94 0 51 66 3 0 30 1.07
6656--6699 22 2.0 21 82 4 52 68 2 0 29 1.02
6713--6769 26 2.3 25 93 6 98 57 17 0 24 1.39
10626--10674 15 3.3 15 100 0 98 32 6 6 55 1.49
15605--15639 17 2.1 17 100 0 70 34 0 22 42 1.54
32869--32911 18 2.3 19 88 4 61 51 0 13 34 1.42
33051--33081 14 2.2 14 100 0 62 64 0 16 19 1.29
33873--33924 26 2.0 26 100 0 104 42 7 7 42 1.62
33877--33932 26 2.2 26 90 6 87 42 8 7 41 1.63
48837--48865 15 1.9 15 100 0 58 62 3 6 27 1.37
49280--49319 20 2.0 20 100 0 80 40 15 0 45 1.46
50283--50320 17 2.2 17 100 0 76 47 5 0 47 1.24
50283--50343 20 3.2 20 84 11 67 44 3 1 50 1.28
50316--50363 10 4.5 10 78 14 51 39 0 4 56 1.19
50313--50356 13 3.6 13 76 17 58 38 0 4 56 1.20
50313--50363 23 2.2 23 100 0 102 39 0 3 56 1.18
53735--53763 11 2.7 11 94 5 51 17 6 6 68 1.34
59565--59602 19 2.0 19 100 0 76 36 10 26 26 1.89
60068--60101 17 2.0 17 94 0 59 20 20 5 52 1.67
66615--66657 22 1.9 23 85 4 61 55 6 6 30 1.53
73157--73185 15 1.9 15 100 0 58 34 17 0 48 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
82842--82873 13 2.4 13 94 5 55 25 6 6 62 1.42
85112--85162 22 2.3 21 81 15 59 49 3 3 43 1.39
92552--92606 24 2.5 22 85 8 67 14 23 12 49 1.78
92574--92641 21 3.2 21 77 8 75 11 20 8 58 1.59
94982--95053 18 4.2 18 89 5 96 31 8 23 36 1.85
102885--102931 23 2.0 24 91 4 78 31 4 6 57 1.43
111078--111141 32 2.0 32 93 0 110 39 25 9 26 1.86
117824--117849 13 2.0 13 100 0 52 30 7 15 46 1.74
131097--131139 18 2.3 19 88 4 61 2 18 4 74 1.10
135044--135107 32 2.0 32 93 0 110 26 9 25 39 1.86
143254--143300 23 2.0 24 91 4 78 57 6 4 31 1.43
151132--151191 18 3.3 18 92 0 102 33 25 10 31 1.89
151132--151203 18 4.2 17 89 5 76 36 23 8 31 1.85
153544--153633 21 4.1 22 75 8 76 55 10 22 12 1.66
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Tables: 1
The End!