NC_067771.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067771.1 Berberis poiretii chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 165934
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8028--8060 17 1.9 17 100 0 66 36 15 6 42 1.71
29558--29585 14 2.0 14 100 0 56 42 14 14 28 1.84
47820--47857 19 2.0 19 100 0 76 52 0 26 21 1.47
58230--58267 19 2.0 19 100 0 76 42 10 21 26 1.85
59518--59799 45 6.3 45 86 0 357 33 12 30 23 1.92
59537--59801 60 4.4 60 89 0 395 32 12 30 24 1.92
59531--59797 15 17.8 15 86 0 291 34 11 30 23 1.90
80415--80482 24 2.8 24 84 4 93 30 19 25 25 1.98
82252--82286 18 2.0 18 94 5 63 22 17 11 48 1.79
89249--89294 11 4.2 12 78 15 55 50 2 0 47 1.13
89245--89310 27 2.4 26 85 14 73 50 3 0 46 1.16
89245--89298 21 2.5 22 91 5 85 50 1 0 48 1.11
89388--89439 21 2.5 21 100 0 104 7 30 9 51 1.62
90206--90379 87 2.0 87 98 0 339 32 22 13 31 1.93
90553--90600 24 2.0 24 91 0 78 35 20 16 27 1.94
107682--107716 17 2.1 17 100 0 70 60 5 11 22 1.52
107691--107738 22 2.2 22 88 7 71 68 4 12 14 1.34
108432--108475 12 4.0 12 75 22 51 50 6 15 27 1.70
108850--108976 11 11.7 11 75 3 123 44 6 10 38 1.64
108849--108982 43 3.1 43 96 1 241 44 5 10 39 1.63
108849--108982 22 6.2 22 92 2 218 44 5 10 39 1.63
109080--109138 29 2.0 29 96 0 109 49 6 15 28 1.70
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
109830--109874 15 3.0 15 100 0 90 33 6 13 46 1.69
110026--110062 15 2.5 15 100 0 74 48 5 29 16 1.68
110926--111034 9 12.7 9 69 19 72 74 1 22 0 0.97
110931--111064 33 4.3 30 79 5 133 71 1 26 0 0.94
110931--111064 15 8.5 15 82 9 133 71 1 26 0 0.94
110925--111060 6 22.5 6 74 0 83 70 1 27 0 1.01
110984--111060 9 9.6 9 71 23 73 63 2 33 0 1.08
112872--112914 21 2.0 21 100 0 86 53 13 9 23 1.69
119624--119668 20 2.3 20 96 3 83 31 4 0 64 1.13
128596--128687 27 3.6 27 85 14 142 15 25 4 55 1.58
128615--128707 21 4.1 21 88 8 114 17 23 5 53 1.64
128950--129004 27 2.0 27 100 0 110 10 21 3 63 1.42
129001--129046 15 3.1 15 96 0 83 36 28 15 19 1.92
129333--129369 15 2.5 15 100 0 74 16 29 5 48 1.68
129521--129565 15 3.0 15 100 0 90 46 13 6 33 1.69
130257--130315 29 2.0 29 96 0 109 28 15 6 49 1.70
130419--130545 11 11.7 11 75 3 123 38 10 6 44 1.64
130413--130546 22 6.2 22 92 2 218 39 10 5 44 1.63
130413--130546 43 3.1 43 96 1 241 39 10 5 44 1.63
130920--130963 12 4.0 12 75 22 51 27 15 6 50 1.70
131657--131704 22 2.2 22 88 7 71 14 12 4 68 1.34
131679--131713 17 2.1 17 100 0 70 22 11 5 60 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
148795--148842 24 2.0 24 91 0 78 27 16 20 35 1.94
149016--149189 87 2.0 87 98 0 339 31 13 22 32 1.93
149956--150007 21 2.5 21 100 0 104 51 9 30 7 1.62
150084--150147 27 2.2 31 86 13 100 46 0 3 50 1.17
150101--150146 11 4.2 12 81 15 55 47 0 2 50 1.13
150099--150150 21 2.5 22 90 6 81 48 0 1 50 1.12
157109--157143 17 2.0 18 94 5 63 48 11 17 22 1.79
158913--158980 24 2.8 24 84 4 93 25 25 19 30 1.98
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Tables: 1
The End!