NC_067787.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067787.1 Leonurus sibiricus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151689
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15197--15236 19 2.1 19 95 0 71 42 12 5 40 1.64
27401--27429 14 2.1 14 100 0 58 58 13 0 27 1.36
31100--31146 23 2.0 23 95 0 85 40 2 4 53 1.32
31103--31153 23 2.2 23 89 0 75 41 3 5 49 1.45
45411--45460 17 2.9 17 82 5 64 40 4 0 56 1.18
56393--56424 16 2.0 16 100 0 64 31 12 18 37 1.88
59169--59213 21 2.1 21 91 0 72 28 22 15 33 1.95
67048--67087 21 1.9 21 100 0 80 30 25 12 32 1.92
70903--70934 14 2.3 14 94 0 55 25 9 6 59 1.52
73844--73886 21 2.0 22 86 4 61 41 11 13 32 1.81
87600--87654 24 2.5 22 85 8 67 14 23 12 49 1.78
87622--87689 21 3.2 21 77 8 75 11 22 10 55 1.65
89997--90072 18 4.4 18 93 4 113 30 7 25 36 1.84
97787--97821 17 2.0 18 94 5 63 28 0 22 48 1.51
105760--105820 31 2.0 31 96 0 113 39 22 9 27 1.86
110057--110095 20 2.0 20 85 10 53 56 25 0 17 1.41
125334--125380 20 2.3 20 81 3 58 31 8 6 53 1.57
128690--128750 31 2.0 31 96 0 113 27 9 22 39 1.86
136689--136723 17 2.0 18 94 5 63 48 22 0 28 1.51
144438--144501 18 3.6 18 97 0 119 34 26 9 29 1.88
144438--144500 9 7.0 9 70 0 54 34 26 7 30 1.85
144438--144513 18 4.4 17 93 4 93 36 25 7 30 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146839--146892 21 2.6 21 82 11 74 59 11 20 9 1.59
146821--146910 21 4.1 22 75 8 67 53 11 23 12 1.70
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!