NC_067846.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067846.1 Phytolacca americana chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155092
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7346--7377 16 2.0 16 100 0 64 25 18 0 56 1.42
7942--7989 22 2.2 22 75 17 55 33 2 0 64 1.05
7939--7987 8 6.5 8 75 13 50 34 2 0 63 1.06
8163--8192 15 2.0 15 100 0 60 53 20 13 13 1.72
10740--10772 11 3.0 11 100 0 66 9 0 0 90 0.44
10740--10790 23 2.3 22 82 3 57 13 1 1 82 0.85
19334--19369 12 3.0 12 100 0 72 33 0 25 41 1.55
32918--32973 26 2.2 26 86 0 76 37 5 5 51 1.47
48301--48334 15 2.3 15 89 0 50 64 11 0 23 1.26
48415--48448 13 2.6 13 95 0 59 38 0 5 55 1.24
63600--63624 12 2.1 12 100 0 50 44 16 16 24 1.86
67078--67107 15 2.0 15 100 0 60 20 0 0 80 0.72
68148--68175 14 2.0 14 100 0 56 35 0 0 64 0.94
70955--70980 13 2.0 13 100 0 52 46 7 7 38 1.61
73984--74019 18 2.0 18 100 0 72 55 0 5 38 1.23
80511--80536 13 2.0 13 100 0 52 38 7 7 46 1.61
90930--90997 21 3.2 21 82 0 82 11 22 8 57 1.61
93299--93391 18 5.2 18 96 0 168 30 9 25 34 1.88
101155--101192 18 2.1 18 95 0 67 26 5 7 60 1.46
109366--109426 31 2.0 31 93 0 104 39 21 9 29 1.85
109945--109970 13 2.0 13 100 0 52 23 38 7 30 1.83
115156--115186 15 2.1 15 93 0 53 22 3 6 67 1.28
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115609--115653 17 2.6 17 96 3 81 42 8 2 46 1.47
131068--131111 21 2.1 21 100 0 88 22 18 9 50 1.75
133607--133632 13 2.0 13 100 0 52 30 7 38 23 1.83
134151--134211 31 2.0 31 93 0 104 29 9 21 39 1.85
142385--142422 18 2.1 18 95 0 67 60 7 5 26 1.46
150186--150278 18 5.2 18 96 0 168 34 25 9 30 1.88
152581--152649 21 3.3 21 83 2 86 56 8 23 11 1.62
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Tables: 1
The End!