NC_067857.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_067857.1 Picrasma quassioides chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160010
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4498--4537 19 2.1 19 90 0 62 37 2 0 60 1.11
4538--4587 25 2.1 23 92 7 82 62 4 2 32 1.25
4829--4858 15 2.0 15 100 0 60 26 0 13 60 1.34
8716--8782 24 2.7 24 79 4 71 25 13 1 59 1.43
8836--8899 21 3.1 21 61 17 53 56 3 12 28 1.51
14345--14381 18 2.1 18 100 0 74 32 21 5 40 1.76
29971--29996 13 2.0 13 100 0 52 30 15 0 53 1.42
33280--33314 17 2.1 17 94 0 61 48 0 22 28 1.51
33668--33707 21 1.9 21 89 0 62 50 2 5 42 1.37
37375--37430 28 2.0 28 100 0 112 35 7 21 35 1.81
37952--38010 17 3.6 17 68 22 54 49 5 6 38 1.52
48937--48968 16 2.0 16 100 0 64 31 6 0 62 1.20
48904--48986 27 3.2 25 70 12 62 38 6 3 51 1.44
49034--49064 14 2.2 14 100 0 62 29 19 0 51 1.47
49112--49152 22 1.9 22 90 5 66 31 4 12 51 1.60
53864--53902 14 3.0 14 89 10 57 28 0 17 53 1.44
54961--54992 16 2.0 16 100 0 64 31 0 12 56 1.37
59410--59434 12 2.1 12 100 0 50 16 28 24 32 1.96
66332--66361 15 2.0 15 100 0 60 26 13 13 46 1.80
71200--71238 21 1.9 21 94 5 71 30 25 10 33 1.89
81124--81159 18 2.0 18 100 0 72 27 16 11 44 1.82
92460--92528 21 3.3 21 83 2 86 11 23 8 56 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94897--94973 9 8.6 9 69 0 55 29 10 27 32 1.90
94897--94974 18 4.3 18 98 0 147 29 10 26 33 1.89
103222--103268 25 1.9 24 86 4 67 25 6 10 57 1.56
107827--107899 38 1.9 37 94 2 128 34 21 23 20 1.97
107886--107915 15 2.0 15 93 0 51 43 26 3 26 1.70
111419--111484 32 2.1 32 94 0 114 40 22 9 27 1.84
117260--117296 18 2.1 18 100 0 74 27 0 21 51 1.48
135656--135721 32 2.1 32 94 0 114 27 9 22 40 1.84
139225--139254 15 2.0 15 93 0 51 26 3 26 43 1.70
139241--139313 38 1.9 37 94 2 128 20 23 21 34 1.97
143872--143918 25 1.9 25 86 4 69 57 10 6 25 1.56
143860--143913 18 3.1 18 73 21 51 53 12 5 27 1.61
152166--152243 18 4.3 18 98 0 147 33 26 10 29 1.89
152179--152242 9 7.1 9 70 0 56 34 28 7 29 1.85
154629--154682 21 2.6 21 90 0 90 59 11 20 9 1.59
154612--154680 21 3.3 21 83 2 86 56 8 23 11 1.62
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Tables: 1
The End!