NC_068049.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_068049.1 Plantago lanceolata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149743
Tables: 1
This is table 1 of 1 ( 44 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5409--5440 15 2.1 16 94 5 57 37 0 6 56 1.25
6863--6894 11 3.1 11 86 13 50 28 9 9 53 1.64
8069--8142 38 1.9 38 88 0 112 45 9 18 25 1.80
8378--8406 10 3.0 10 95 5 51 51 0 10 37 1.36
35677--35708 16 2.0 16 100 0 64 37 12 12 37 1.81
45278--45304 12 2.2 12 100 0 54 51 0 7 40 1.30
55158--55185 13 2.2 13 100 0 56 7 0 0 92 0.37
55394--55539 75 1.9 75 80 2 168 33 15 32 18 1.93
55461--55647 66 2.8 66 91 0 284 28 16 32 21 1.95
56044--56089 15 3.1 15 96 0 83 26 8 28 36 1.86
56245--56340 48 2.0 48 97 0 183 32 12 34 20 1.90
56352--56386 15 2.3 15 85 0 52 34 2 34 28 1.72
56366--56451 21 4.0 21 71 14 75 30 6 32 30 1.84
56431--56609 15 11.1 15 80 13 178 25 11 30 32 1.91
56413--56609 51 4.0 47 81 10 177 26 11 30 31 1.91
56431--56639 66 3.2 66 79 2 249 24 11 31 32 1.90
56430--56609 81 2.2 81 90 0 297 26 11 30 32 1.92
56484--56639 51 3.2 51 86 5 207 25 9 32 33 1.88
63645--63695 15 3.5 15 86 10 70 43 0 3 52 1.19
64168--64199 16 2.0 16 93 0 55 37 6 15 40 1.73
66108--66168 21 2.9 21 97 0 113 29 27 13 29 1.94
77555--77582 14 2.0 14 100 0 56 35 21 7 35 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81444--81513 18 4.1 18 74 10 65 14 45 12 27 1.81
84818--84853 12 3.0 12 100 0 72 41 0 33 25 1.55
86157--86238 21 3.9 21 100 0 164 23 19 18 39 1.93
87563--87621 30 1.9 31 93 3 102 23 23 11 40 1.88
88807--88880 18 4.4 18 72 19 70 24 12 35 28 1.91
96015--96040 13 2.0 13 100 0 52 69 7 15 7 1.35
96494--96527 17 2.0 17 94 0 59 26 2 23 47 1.66
105940--106070 42 2.7 52 76 23 183 60 9 11 18 1.58
105967--106059 42 2.2 42 100 0 186 56 9 11 21 1.63
108513--108554 20 2.0 21 86 13 61 54 23 0 21 1.44
109535--109565 15 2.1 15 100 0 62 32 0 6 61 1.21
118400--118424 12 2.1 12 100 0 50 44 16 8 32 1.76
121163--121203 21 2.0 21 100 0 82 14 14 9 60 1.57
121256--121287 16 2.0 16 100 0 64 0 6 6 87 0.67
122455--122518 33 1.9 33 100 0 128 42 9 14 34 1.77
126015--126107 42 2.2 42 100 0 186 21 11 9 56 1.63
135547--135580 17 2.0 17 94 0 59 47 23 2 26 1.66
136034--136059 13 2.0 13 100 0 52 7 15 7 69 1.35
143194--143267 18 4.4 18 74 19 70 28 35 12 24 1.91
144453--144511 30 1.9 31 93 3 102 40 11 23 23 1.88
145836--145917 21 3.9 21 100 0 164 39 18 19 23 1.93
147221--147256 12 3.0 12 100 0 72 25 33 0 41 1.55
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Tables: 1
The End!