NC_068704.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_068704.1 Prunus sibirica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158172
Tables: 1
This is table 1 of 1 ( 56 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6--58 15 3.8 15 69 25 53 52 0 0 47 1.00
1--64 25 2.8 22 86 13 101 54 0 0 45 0.99
4--59 25 2.2 25 96 0 103 53 0 0 46 1.00
61--122 22 2.8 22 90 4 72 40 0 0 59 0.97
66--99 17 2.0 17 100 0 68 41 0 0 58 0.98
4914--4939 13 2.0 13 100 0 52 46 7 0 46 1.31
7032--7101 30 2.3 29 85 9 88 42 0 2 54 1.15
8575--8604 15 1.9 16 93 6 53 43 13 13 30 1.82
8620--8654 17 2.0 17 88 5 52 22 5 0 71 1.07
9845--9875 11 2.7 11 95 5 53 58 0 3 38 1.15
10099--10139 20 2.0 20 90 0 64 60 0 0 39 0.96
10342--10376 13 2.6 13 95 4 61 54 0 5 40 1.24
13464--13497 17 2.0 17 100 0 68 41 11 17 29 1.85
21420--21449 15 2.0 15 93 0 51 36 13 16 33 1.88
21425--21454 15 2.0 15 93 0 51 33 13 23 30 1.93
27990--28017 13 2.2 13 100 0 56 39 0 21 39 1.54
29131--29166 17 2.1 17 94 0 63 30 5 2 61 1.33
34233--34269 15 2.6 15 87 8 51 67 0 8 24 1.17
44283--44316 16 2.1 16 100 0 68 58 5 0 35 1.22
48495--48548 15 3.6 15 80 14 58 62 0 1 35 1.06
48476--48524 21 2.3 21 96 0 89 61 0 0 38 0.96
48487--48533 21 2.2 21 85 7 60 65 0 0 34 0.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48486--48535 23 2.3 21 86 6 64 64 0 0 36 0.94
48507--48549 15 2.9 14 86 10 59 62 0 2 34 1.08
49095--49120 13 2.0 13 100 0 52 46 0 23 30 1.53
50521--50573 13 4.2 13 78 11 56 43 1 5 49 1.37
51690--51721 16 2.0 16 100 0 64 18 12 12 56 1.67
53190--53382 2 105.5 2 66 23 61 51 4 1 42 1.29
53198--53245 5 9.6 5 78 17 55 56 4 0 39 1.19
53197--53379 9 19.7 9 70 19 76 52 4 1 42 1.28
53203--53251 15 3.3 15 83 11 64 55 4 0 40 1.19
53193--53275 20 4.0 21 80 14 86 51 4 2 40 1.36
53284--53379 39 2.4 40 82 6 115 50 5 0 44 1.24
67753--67787 17 2.1 17 88 0 52 34 5 11 48 1.63
67880--67939 29 2.1 29 100 0 120 25 13 10 51 1.71
72025--72061 15 2.5 15 95 0 65 56 0 5 37 1.22
76638--76673 18 2.0 18 100 0 72 38 5 11 44 1.63
91369--91436 21 3.2 21 82 0 82 11 22 7 58 1.57
93788--93839 18 2.9 18 94 0 95 32 7 28 30 1.85
96814--96864 17 3.1 16 78 16 59 52 7 0 39 1.30
96819--96856 16 2.5 16 87 8 53 50 5 0 44 1.24
101357--101382 12 2.2 12 100 0 52 7 7 0 84 0.77
110079--110142 31 2.1 31 93 0 110 40 25 7 26 1.82
116147--116189 20 2.2 20 100 0 86 55 9 4 30 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116458--116501 13 3.4 14 84 15 67 45 0 0 54 0.99
116458--116502 19 2.3 19 96 3 81 46 0 0 53 1.00
116719--116755 18 2.1 17 95 5 65 56 5 2 35 1.36
130430--130463 15 2.3 15 94 0 59 0 20 5 73 1.04
130435--130479 18 2.5 19 85 7 58 2 24 2 71 1.09
134423--134486 31 2.1 31 93 0 110 26 7 25 40 1.82
143183--143208 12 2.2 12 100 0 52 84 0 7 7 0.77
147703--147753 17 3.1 18 75 16 56 41 0 7 50 1.31
147709--147753 16 2.8 16 83 6 56 44 0 6 48 1.29
147709--147763 15 3.6 16 78 9 62 47 0 5 47 1.25
150726--150777 18 2.9 18 94 0 95 30 28 7 32 1.85
153130--153218 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!