NC_068715.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_068715.1 Vaccinium myrtillus chloroplast, complete sequence
Parameters: 2 7 7 80 10 50 500
Length: 191744
Tables: 1
This is table 1 of 1 ( 66 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
23695--23735 18 2.3 18 95 4 75 41 4 14 39 1.67
24354--24378 12 2.1 12 100 0 50 20 16 8 56 1.65
31803--31834 14 2.4 14 94 5 57 56 6 6 31 1.49
32655--32684 15 2.0 15 100 0 60 20 26 20 33 1.97
33879--33946 2 33.0 2 72 16 50 45 7 2 44 1.46
33872--33945 29 2.5 28 80 8 94 45 8 4 41 1.52
52871--52907 13 2.8 13 100 0 74 75 0 8 16 1.02
53285--53317 13 2.4 14 90 5 50 72 3 12 12 1.23
52605--54615 396 5.0 399 91 4 3200 33 18 20 27 1.96
53682--53718 13 2.8 13 100 0 74 75 0 8 16 1.02
54096--54128 13 2.4 14 90 5 50 72 3 12 12 1.23
62411--62454 20 2.2 20 100 0 88 50 0 20 29 1.49
63295--63334 20 2.0 20 100 0 80 30 10 10 50 1.69
83066--83664 219 2.7 218 85 4 776 29 20 19 31 1.97
84533--84576 22 2.0 21 83 12 54 54 11 15 18 1.70
84859--84888 15 2.0 15 100 0 60 13 20 0 66 1.24
85659--85715 12 5.0 12 81 12 75 14 7 26 52 1.66
86342--86417 23 3.3 23 87 3 100 23 14 14 47 1.81
88686--88855 21 8.1 21 88 0 250 10 25 28 35 1.89
88686--88855 63 2.7 63 92 0 277 10 25 28 35 1.89
94080--94141 12 5.2 12 79 14 74 14 12 8 64 1.49
94077--94141 24 2.7 24 97 0 121 13 13 7 64 1.48
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
96601--96639 18 2.2 18 95 0 69 20 0 7 71 1.10
99682--99757 24 3.3 24 78 9 77 38 5 34 22 1.77
100028--100053 13 2.0 13 100 0 52 46 15 15 23 1.83
114136--114172 12 3.1 12 88 0 56 24 8 10 56 1.60
114232--114299 19 3.5 19 84 11 102 54 0 13 32 1.39
114247--114310 20 3.2 20 82 12 96 57 0 12 29 1.35
114232--114310 39 2.0 39 100 0 158 55 0 12 31 1.37
117191--117221 14 2.2 14 94 0 53 58 3 19 19 1.53
124955--124984 15 2.0 15 100 0 60 33 20 26 20 1.97
126921--126958 12 3.1 13 81 14 53 63 7 15 13 1.51
127636--127688 27 2.0 27 96 0 97 39 0 16 43 1.49
127869--127914 16 2.6 18 77 22 53 50 15 10 23 1.75
128936--128972 12 3.1 12 88 0 56 24 8 10 56 1.60
129032--129099 19 3.5 19 84 11 102 54 0 13 32 1.39
129047--129110 20 3.2 20 82 12 96 57 0 12 29 1.35
129032--129110 39 2.0 39 100 0 158 55 0 12 31 1.37
130706--130730 12 2.1 12 100 0 50 20 16 8 56 1.65
130836--130867 16 2.0 16 100 0 64 18 25 0 56 1.42
132434--132682 87 2.8 87 89 3 356 34 5 32 28 1.79
135419--135456 14 2.7 14 87 0 58 31 15 7 44 1.75
138525--138555 14 2.2 14 94 0 53 58 3 19 19 1.53
145399--145483 42 2.0 42 83 0 107 27 20 14 38 1.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147146--147230 42 2.0 42 83 0 107 27 20 14 38 1.90
150386--150423 19 2.0 19 89 0 58 23 23 7 44 1.79
150932--150962 16 2.0 16 93 6 55 54 0 6 38 1.26
151649--151733 42 2.0 42 83 0 107 38 14 20 27 1.90
153396--153480 42 2.0 42 83 0 107 38 14 20 27 1.90
160324--160354 14 2.2 14 94 0 53 19 19 3 58 1.53
163423--163460 14 2.7 14 87 0 58 44 7 15 31 1.75
166197--166445 87 2.8 87 89 3 356 28 32 5 34 1.79
168012--168043 16 2.0 16 100 0 64 56 0 25 18 1.42
168149--168173 12 2.1 12 100 0 50 56 8 16 20 1.65
169780--169847 19 3.5 19 84 11 102 32 13 0 54 1.39
169769--169847 39 2.0 39 100 0 158 31 12 0 55 1.37
169769--169832 20 3.2 20 82 12 96 29 12 0 57 1.35
170965--171010 16 2.6 18 77 22 53 23 10 15 50 1.75
171191--171243 27 2.0 27 96 0 97 43 16 0 39 1.49
171923--171960 12 3.2 12 82 14 51 15 13 7 63 1.51
171921--171966 24 1.9 24 86 0 65 17 13 6 63 1.50
173895--173924 15 2.0 15 100 0 60 20 26 20 33 1.97
181658--181688 14 2.2 14 94 0 53 19 19 3 58 1.53
184580--184647 19 3.5 19 84 11 102 32 13 0 54 1.39
184569--184647 39 2.0 39 100 0 158 31 12 0 55 1.37
184569--184632 20 3.2 20 82 12 96 29 12 0 57 1.35
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Tables: 1
The End!