NC_068762.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_068762.1 Stachyurus himalaicus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 162642
Tables: 1
This is table 1 of 1 ( 94 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
18--56 8 4.9 8 81 12 53 41 0 0 58 0.98
6--56 24 2.1 24 100 0 102 43 0 0 56 0.99
51--132 7 12.1 7 78 7 64 68 0 0 31 0.90
16--63 15 3.0 16 85 11 55 43 0 0 56 0.99
53--144 16 5.6 16 80 17 109 69 0 0 30 0.89
95--158 23 2.8 22 72 13 58 71 0 0 28 0.86
538--567 14 2.1 14 100 0 60 70 6 6 16 1.31
5161--5199 15 2.6 15 87 0 51 53 20 2 23 1.57
5174--5203 15 2.0 15 100 0 60 53 20 6 20 1.67
5196--5228 16 2.1 16 94 0 57 66 0 9 24 1.20
5842--5869 14 2.0 14 100 0 56 35 0 21 42 1.53
9280--9307 13 2.2 13 100 0 56 28 7 0 64 1.20
10631--10664 12 2.6 13 90 9 52 29 0 0 70 0.87
10675--10705 16 1.9 16 93 0 53 58 0 6 35 1.24
11116--11159 23 2.0 21 86 8 61 38 4 0 56 1.20
11158--11196 14 2.7 15 96 4 71 66 0 7 25 1.18
13958--13987 15 2.0 15 93 0 51 20 16 6 56 1.62
15639--15665 13 2.1 13 100 0 54 25 14 0 59 1.36
17758--17805 24 2.0 24 96 4 89 43 14 20 20 1.87
19108--19132 12 2.1 12 100 0 50 40 8 16 36 1.77
29078--29102 12 2.1 12 100 0 50 16 16 0 68 1.22
30189--30228 19 2.1 19 86 9 55 72 0 15 12 1.12
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
30236--30260 12 2.1 12 100 0 50 52 32 0 16 1.44
31850--31882 16 2.1 16 100 0 66 30 0 6 63 1.18
32928--32967 19 2.1 19 100 0 80 47 10 10 32 1.70
34201--34232 16 2.0 16 100 0 64 62 0 6 31 1.20
34203--34258 27 2.1 27 89 0 85 57 1 5 35 1.32
34230--34277 16 2.9 17 76 14 55 52 4 6 37 1.46
34336--34389 14 4.0 14 95 4 94 70 0 22 7 1.12
34889--34934 23 2.0 23 87 8 67 28 17 10 43 1.82
35241--35280 20 2.0 20 90 0 62 40 2 12 45 1.56
35873--35913 13 3.2 13 93 3 66 36 0 4 58 1.20
40013--40057 8 6.0 8 80 19 53 64 0 0 35 0.94
40087--40122 12 3.0 12 91 0 54 52 0 0 47 1.00
40105--40199 17 5.5 17 81 12 95 48 0 0 51 1.00
40122--40150 14 2.1 14 100 0 58 41 0 0 58 0.98
40113--40156 14 3.4 14 77 22 51 45 0 0 54 0.99
40105--40199 34 2.7 34 82 10 113 48 0 0 51 1.00
40432--40473 21 2.0 21 100 0 84 42 0 14 42 1.45
46402--46427 13 2.0 13 100 0 52 15 0 15 69 1.20
49110--49148 13 2.7 15 92 7 64 46 17 7 28 1.76
50595--50633 18 2.2 18 100 0 78 61 0 5 33 1.18
50605--50654 26 2.0 24 92 7 82 68 0 2 30 1.01
50989--51026 19 2.0 19 100 0 76 21 26 0 52 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
50991--51023 10 3.4 10 83 8 50 21 24 0 54 1.45
51343--51384 11 3.8 11 75 12 50 40 0 2 57 1.12
51349--51395 22 2.1 22 100 0 94 40 0 4 55 1.19
51402--51461 12 5.1 12 77 4 68 45 10 0 45 1.37
51396--51481 35 2.5 35 98 0 163 41 11 0 46 1.40
51485--51556 37 2.0 36 91 8 119 37 11 0 51 1.38
51497--51557 22 2.7 22 71 2 68 39 11 0 49 1.39
56318--56342 11 2.3 11 100 0 50 44 0 16 40 1.47
60472--60497 13 2.0 13 100 0 52 38 0 15 46 1.46
62133--62158 13 2.0 13 100 0 52 23 0 15 61 1.33
62426--62474 24 2.0 24 100 0 98 40 16 0 42 1.48
62428--62485 24 2.4 24 88 5 73 48 15 0 36 1.45
62497--62551 26 2.2 24 83 6 65 43 0 9 47 1.35
62497--62551 24 2.4 24 81 6 69 43 0 9 47 1.35
62527--62560 16 2.1 16 88 0 50 41 0 8 50 1.34
62600--62628 15 1.9 15 100 0 58 65 0 27 6 1.18
64877--64912 13 2.9 13 92 8 58 80 0 8 11 0.90
66268--66294 13 2.1 13 100 0 54 48 14 7 29 1.71
67703--67745 23 1.9 22 85 4 59 23 16 11 48 1.78
69053--69098 23 2.0 23 100 0 92 21 8 0 69 1.15
71695--71720 13 2.0 13 100 0 52 69 0 0 30 0.89
74268--74303 18 2.1 17 89 5 54 58 0 0 41 0.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
74318--74359 22 1.9 22 90 0 66 38 4 0 57 1.20
74428--74466 21 1.9 21 89 5 62 33 25 7 33 1.84
78063--78137 6 13.0 6 76 16 70 58 1 4 36 1.25
78063--78137 16 4.4 17 86 11 91 58 1 4 36 1.25
83257--83285 15 1.9 15 100 0 58 27 13 3 55 1.55
85924--85971 24 2.0 24 87 0 69 29 31 14 25 1.95
88482--88525 21 2.1 21 100 0 88 52 0 13 34 1.41
95802--95890 21 4.1 21 81 5 81 13 22 10 53 1.69
95822--95890 21 3.3 21 83 2 86 13 23 8 55 1.65
98257--98369 18 6.3 18 83 6 140 30 10 25 32 1.90
98257--98369 36 3.1 36 87 2 165 30 10 25 32 1.90
98267--98369 54 1.9 54 97 0 197 30 11 26 32 1.92
106576--106613 18 2.1 18 95 0 67 23 7 5 63 1.42
114619--114684 32 2.1 32 91 0 105 39 24 9 27 1.85
120207--120251 24 2.0 23 82 8 56 57 11 4 26 1.52
132069--132096 14 2.0 14 100 0 56 42 0 28 28 1.56
132557--132620 19 3.0 23 82 13 82 60 0 1 37 1.06
132570--132620 19 2.7 19 93 0 84 66 0 1 31 1.03
132589--132626 4 9.8 4 82 5 51 73 0 0 26 0.83
132917--132952 16 2.2 16 100 0 72 25 13 0 61 1.33
132923--132959 16 2.3 16 90 0 56 32 8 0 59 1.27
132967--133012 13 3.6 13 80 13 51 54 0 2 43 1.12
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136154--136205 23 2.1 24 82 10 61 32 3 1 61 1.25
138965--139030 32 2.1 32 91 0 105 27 9 24 39 1.85
147036--147073 18 2.1 18 95 0 67 63 5 7 23 1.42
155280--155392 18 6.3 18 89 0 172 32 25 10 30 1.90
155280--155382 54 1.9 54 97 0 197 32 26 11 30 1.92
157759--157827 21 3.3 21 83 2 86 55 8 23 13 1.65
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Tables: 1
The End!