NC_069292.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_069292.1 Betula utilis chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 160701 Tables: 1 2 This is table 1 of 2 ( 135 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 1847--1892 13 3.5 13 78 21 51 65 0 15 19 1.28 1838--1892 20 2.8 20 97 0 101 65 0 12 21 1.26 1847--1892 7 7.0 6 83 16 56 65 0 15 19 1.28 1930--1987 7 8.3 7 79 12 66 46 0 0 53 1.00 1906--1987 14 6.2 13 76 12 69 45 0 1 53 1.08 1906--1976 25 2.8 24 79 12 70 45 0 1 53 1.09 4748--4783 18 2.0 18 94 0 63 58 0 13 27 1.36 4835--4860 11 2.4 11 100 0 52 26 0 0 73 0.84 5217--5318 38 2.8 37 80 17 117 64 0 0 33 1.07 5261--5332 6 12.3 6 75 19 55 66 0 1 31 1.00 5217--5330 9 13.1 9 71 24 77 64 0 1 32 1.09 5233--5332 24 4.3 23 74 17 82 65 1 2 32 1.11 5217--5298 38 2.2 40 87 10 120 62 1 1 35 1.11 5735--5775 21 1.9 22 95 5 75 43 2 17 36 1.62 6922--6950 14 2.1 14 100 0 58 65 0 0 34 0.93 7629--7686 19 3.1 19 97 0 107 41 6 10 41 1.66 9210--9255 23 2.0 22 84 12 58 26 0 2 71 0.97 9361--9385 12 2.1 12 100 0 50 28 32 0 40 1.57 9448--9507 30 2.0 30 86 3 84 48 1 3 46 1.28 9474--9520 25 2.0 25 83 8 62 53 0 4 42 1.20 10890--10919 15 2.0 15 100 0 60 33 13 0 53 1.40 10910--10973 20 3.0 23 82 15 91 31 4 3 60 1.32 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 10909--10984 23 3.5 22 77 12 75 35 5 2 56 1.36 11003--11086 15 5.7 15 75 20 70 23 5 0 70 1.09 10998--11086 10 8.9 10 77 19 64 24 5 0 69 1.10 11002--11069 24 3.0 23 85 6 86 25 5 0 69 1.11 11113--11155 9 4.7 9 82 5 50 41 4 4 48 1.44 11097--11158 28 2.3 27 81 13 74 43 4 4 46 1.46 11114--11155 14 3.0 14 73 13 50 40 4 4 50 1.45 11406--11445 19 2.1 19 95 0 71 30 2 5 62 1.29 11451--11519 25 2.8 26 86 8 99 52 2 5 39 1.41 11467--11540 25 2.9 25 87 4 85 54 0 5 40 1.24 11495--11555 20 3.0 20 74 11 52 57 0 3 39 1.15 11495--11553 15 3.9 15 73 4 55 57 0 3 38 1.15 11632--11677 24 1.9 24 100 0 92 34 13 17 34 1.88 14109--14147 19 2.1 19 100 0 78 46 10 0 43 1.37 19411--19435 12 2.1 12 100 0 50 52 8 8 32 1.60 30231--30274 17 2.7 17 93 6 74 27 0 4 68 1.09 34458--34516 22 2.7 23 87 10 63 27 3 0 69 1.04 34586--34612 13 2.1 13 100 0 54 40 7 0 51 1.30 35494--35613 28 4.5 27 74 17 99 31 1 0 66 1.01 35494--35601 26 4.3 24 77 20 89 30 1 0 67 1.01 35494--35601 10 11.3 10 66 22 54 30 1 0 67 1.01 35521--35627 46 2.3 47 79 6 110 35 0 0 63 1.01 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 35519--35610 15 6.1 15 70 17 66 30 1 0 68 0.97 35558--35613 19 2.9 19 77 12 69 30 0 0 69 0.89 35608--35730 24 5.0 24 72 20 69 48 0 6 44 1.28 35604--35730 33 3.9 33 71 15 102 48 0 6 45 1.28 35652--35713 7 9.0 7 74 22 51 46 0 8 45 1.32 35676--35712 11 3.1 12 85 14 58 48 0 8 43 1.32 35690--35756 13 5.2 13 82 12 66 56 0 13 29 1.37 35644--35742 24 4.3 22 81 10 67 50 0 9 40 1.34 35703--35755 15 4.2 12 84 13 54 58 0 15 26 1.37 39791--39844 9 6.6 8 82 18 67 40 0 0 59 0.98 39793--39843 25 2.0 25 85 14 70 43 0 0 56 0.99 39791--39845 16 3.4 16 87 7 76 41 0 0 58 0.98 39927--39962 17 2.2 17 90 5 56 25 16 16 41 1.89 40379--40428 11 4.5 11 80 9 57 44 0 0 56 0.99 40378--40462 33 2.7 32 83 7 102 43 0 0 56 0.99 40469--40509 18 2.3 18 91 4 66 39 7 0 53 1.29 40732--40778 23 2.0 23 91 0 76 29 2 27 40 1.68 46571--46599 14 2.1 14 100 0 58 27 0 6 65 1.18 46817--46875 16 3.7 16 77 4 57 72 3 1 22 1.08 46820--46886 20 3.3 20 71 8 55 73 2 2 20 1.10 46849--46888 20 2.1 19 90 4 62 77 5 2 15 1.04 49039--49064 13 2.0 13 100 0 52 30 0 15 53 1.42 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 51010--51045 10 3.8 10 85 14 58 47 0 0 52 1.00 51011--51045 18 1.9 18 100 0 70 45 0 0 54 0.99 51029--51074 24 1.9 24 95 0 83 41 4 4 50 1.42 51158--51199 13 3.2 13 90 10 59 59 0 0 40 0.97 51158--51202 22 2.0 23 91 4 74 57 0 0 42 0.98 53191--53225 18 1.9 18 100 0 70 17 0 2 80 0.84 53224--53248 13 1.9 13 100 0 50 56 0 8 36 1.29 53244--53286 13 3.2 13 90 3 68 69 0 6 23 1.12 53244--53286 14 3.1 14 86 6 70 69 0 6 23 1.12 53226--53290 33 1.9 34 84 9 89 64 0 7 27 1.20 53266--53306 11 3.7 11 87 6 57 63 0 2 34 1.08 55493--55570 22 3.7 22 74 22 94 32 10 0 57 1.32 55493--55568 12 7.1 11 73 22 56 31 10 0 57 1.32 55491--55561 29 2.5 29 90 4 110 32 9 0 57 1.31 55595--55666 3 22.7 3 78 16 74 40 0 0 59 0.97 55596--55641 13 3.5 13 100 0 92 39 0 0 60 0.97 55595--55666 16 4.7 16 77 22 82 40 0 0 59 0.97 55595--55675 32 2.5 32 88 4 119 41 0 0 58 0.98 55598--55673 13 6.4 13 83 11 85 42 0 0 57 0.98 55630--55728 26 3.9 25 70 20 71 44 0 1 54 1.06 55727--55783 12 4.8 12 73 4 53 28 0 0 71 0.86 55732--55791 23 2.7 23 82 5 79 26 0 0 73 0.84 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 55746--55785 10 3.7 10 81 18 53 30 0 0 70 0.88 55784--55810 14 1.9 14 100 0 54 40 0 7 51 1.30 55814--55853 15 2.7 15 88 3 55 40 0 0 60 0.97 55827--55907 19 4.0 20 71 20 62 34 2 1 61 1.17 55873--55919 25 2.0 24 87 8 69 34 2 0 63 1.06 55924--55954 14 2.2 14 100 0 62 41 0 6 51 1.27 64126--64171 20 2.3 20 80 0 56 50 0 0 50 1.00 64223--64266 22 2.0 22 95 0 79 36 20 4 38 1.73 69867--69892 13 2.0 13 100 0 52 15 0 15 69 1.20 70223--70258 18 2.0 18 100 0 72 22 27 0 50 1.50 70422--70464 13 3.3 13 80 0 50 44 0 2 53 1.13 70430--70479 19 2.6 19 75 15 57 52 2 2 44 1.24 70427--70477 26 2.0 26 84 7 68 50 1 1 45 1.24 70466--70509 14 3.0 15 83 12 56 45 4 9 40 1.56 71726--71773 13 3.1 17 74 22 59 56 0 0 43 0.99 72492--72526 17 2.1 17 100 0 70 48 5 17 28 1.69 72744--72774 15 2.1 15 93 0 53 35 12 22 29 1.91 74973--74999 14 1.9 14 100 0 54 40 7 0 51 1.30 86921--86955 17 2.1 17 100 0 70 31 11 0 57 1.34 87039--87102 24 2.7 23 78 4 74 42 0 12 45 1.42 89052--89081 15 2.0 15 100 0 60 40 20 20 20 1.92 90207--90248 20 2.0 21 90 9 68 33 11 4 50 1.60 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 94414--94481 21 3.2 21 82 0 82 11 22 7 58 1.57 96834--96893 18 3.3 18 97 0 111 33 5 30 31 1.79 96834--96894 9 6.8 9 78 0 68 32 6 29 31 1.83 99575--99624 25 2.0 25 100 0 100 52 8 8 32 1.60 104638--104675 18 2.1 18 100 0 76 26 5 5 63 1.37 112719--112779 31 2.0 31 96 0 113 39 22 9 27 1.86 115637--115674 16 2.4 17 86 8 53 34 0 0 65 0.93 115629--115687 14 4.6 13 74 17 52 35 1 0 62 1.05 115756--115795 19 2.2 18 86 4 53 70 0 2 27 1.01 118499--118550 21 2.5 21 93 3 88 51 3 5 38 1.44 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2