NC_069294.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_069294.1 Bergenia purpurascens chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155802
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3607--3638 16 2.0 16 100 0 64 37 0 12 50 1.41
10335--10400 6 11.2 6 77 18 50 48 0 1 50 1.10
10336--10400 18 3.7 18 79 10 71 49 0 1 49 1.10
29675--29730 17 3.4 17 75 9 71 60 8 17 12 1.57
29668--29731 32 2.0 32 100 0 128 59 12 15 12 1.61
32745--32792 24 2.0 24 100 0 96 29 12 8 50 1.69
32747--32818 24 2.9 24 81 10 65 36 8 9 45 1.67
33690--33743 27 2.0 27 100 0 108 62 3 14 18 1.46
37981--38041 20 2.9 20 90 7 86 47 11 3 37 1.56
38080--38140 18 3.6 19 70 30 66 29 8 0 62 1.24
38081--38158 16 5.1 16 74 13 83 28 8 0 62 1.25
38104--38176 27 2.5 30 79 16 84 30 6 0 63 1.21
38080--38176 29 3.4 29 87 8 137 30 7 0 61 1.23
38079--38232 54 2.8 53 78 13 129 36 4 0 58 1.23
38164--38235 11 6.8 11 69 29 50 43 0 1 55 1.08
38203--38236 9 3.7 9 84 7 50 38 0 0 61 0.96
38161--38248 15 6.5 14 71 24 55 40 0 1 57 1.06
38159--38237 19 4.3 19 82 10 101 43 0 1 55 1.07
38209--38255 15 3.1 15 84 6 51 38 0 0 61 0.96
48889--48942 17 3.1 17 86 5 72 31 9 0 59 1.29
48930--48976 10 4.8 9 82 17 58 34 2 0 63 1.06
48927--48976 20 2.5 21 87 9 77 34 2 0 64 1.05
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
61884--61930 17 2.7 17 78 15 51 48 4 2 44 1.34
61915--61948 17 2.0 17 100 0 68 52 0 0 47 1.00
61941--61966 13 2.0 13 100 0 52 61 0 0 38 0.96
69928--69964 18 2.1 18 100 0 74 51 16 10 21 1.74
70548--70588 21 2.0 21 95 0 73 29 26 9 34 1.88
81830--81878 24 2.0 24 88 0 71 28 30 14 26 1.95
85975--86016 19 2.4 17 78 17 50 35 14 4 45 1.66
90824--90912 21 4.1 21 81 5 90 12 23 10 53 1.68
92879--92908 15 2.0 15 100 0 60 26 13 13 46 1.80
93287--93358 18 4.2 18 92 5 105 30 8 25 36 1.85
95500--95539 20 2.0 20 100 0 80 45 10 10 35 1.71
101195--101229 14 2.4 14 90 4 52 34 0 14 51 1.42
105800--105874 38 2.0 37 97 2 141 32 24 25 18 1.97
109381--109446 32 2.1 32 97 0 123 40 24 9 25 1.84
125697--125739 21 2.0 21 100 0 86 58 4 13 23 1.55
133002--133067 32 2.1 32 97 0 123 25 9 24 40 1.84
136574--136648 38 2.0 37 97 2 141 18 25 24 32 1.97
141219--141253 14 2.4 14 90 4 52 51 14 0 34 1.42
146909--146948 20 2.0 20 100 0 80 35 10 10 45 1.71
149090--149149 18 3.3 18 97 0 111 33 26 10 30 1.89
149090--149161 18 4.2 17 92 5 85 36 25 8 30 1.85
149540--149569 15 2.0 15 100 0 60 46 13 13 26 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151536--151624 21 4.1 21 81 5 90 53 10 23 12 1.68
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!