NC_071780.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_071780.1 Bambusa textilis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 139354
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7796--7833 20 1.9 20 84 10 51 23 10 15 50 1.75
8315--8350 17 2.1 17 100 0 72 52 33 0 13 1.41
12538--12591 27 2.0 27 100 0 108 51 3 14 29 1.60
15875--16003 68 1.9 68 91 0 213 29 13 26 30 1.94
20507--20542 18 2.0 18 100 0 72 38 22 5 33 1.77
21062--21102 20 2.0 20 100 0 82 26 14 9 48 1.75
26710--26750 21 2.0 21 100 0 82 26 29 14 29 1.95
27603--27632 15 2.0 15 100 0 60 33 33 13 20 1.91
28679--28738 21 2.9 21 94 0 102 38 16 30 15 1.89
28679--28876 42 4.9 42 73 14 141 39 16 29 14 1.88
28744--28939 21 9.8 20 69 12 118 39 16 30 12 1.86
28854--29026 33 5.0 33 70 14 132 38 16 32 13 1.87
28679--28948 138 2.0 138 92 1 452 39 17 29 13 1.88
52310--52373 31 2.1 31 100 0 128 35 12 9 42 1.75
58066--58099 18 1.9 18 94 5 61 52 5 17 23 1.66
67875--68009 21 6.4 21 87 0 180 37 25 7 29 1.83
68297--68355 21 2.8 21 72 10 57 47 22 11 18 1.81
70689--70722 17 2.0 17 94 0 59 50 5 14 29 1.67
78521--78567 18 2.6 18 89 0 67 19 23 17 40 1.91
78789--78846 18 3.3 18 80 7 57 5 18 6 68 1.31
82081--82177 45 2.2 45 92 1 160 21 15 15 47 1.82
107708--107756 16 3.1 16 100 0 98 57 6 12 24 1.58
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112515--112546 16 2.0 16 100 0 64 43 12 6 37 1.68
112990--113020 13 2.4 13 94 0 53 22 3 9 64 1.38
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Tables: 1
The End!