NC_072068.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_072068.1 Elaeocarpus serratus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158327
Tables: 1
This is table 1 of 1 ( 113 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1--62 10 5.8 11 87 12 94 37 0 9 53 1.34
1--61 22 2.8 22 92 7 99 37 0 9 52 1.35
340--401 27 2.4 25 87 10 97 51 3 8 37 1.48
347--403 27 2.1 27 100 0 114 54 3 7 35 1.45
3841--3869 13 2.2 13 100 0 58 55 6 20 17 1.65
5521--5548 14 2.0 14 100 0 56 42 21 14 21 1.88
7149--7175 14 1.9 14 100 0 54 44 7 3 44 1.49
7151--7201 25 2.2 22 82 10 57 50 7 1 39 1.42
7606--7679 15 5.1 15 96 3 134 0 41 0 58 0.98
7606--7679 29 2.6 29 93 6 132 0 41 0 58 0.98
7758--7782 12 2.1 12 100 0 50 36 24 0 40 1.55
8038--8075 20 1.9 19 89 5 58 5 2 7 84 0.86
8119--8160 12 3.5 12 87 9 59 80 0 0 19 0.70
8494--8543 23 2.1 24 85 10 68 46 22 0 32 1.52
8525--8559 11 3.3 11 84 8 54 57 8 2 31 1.44
8829--8866 18 2.1 18 85 14 51 18 7 0 73 1.06
9128--9169 10 4.1 10 87 6 66 50 9 0 40 1.35
9131--9172 21 2.0 21 100 0 84 52 9 0 38 1.34
10134--10177 19 2.3 19 84 0 52 59 0 4 36 1.18
10523--10570 7 7.1 7 79 6 55 68 2 0 29 1.01
10511--10554 14 3.1 14 74 6 52 61 4 0 34 1.16
10519--10576 20 2.9 20 76 5 64 67 1 0 31 1.01
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10511--10570 27 2.1 28 90 6 95 65 3 0 31 1.09
10527--10609 27 3.1 27 77 8 64 54 1 1 43 1.16
10571--10616 25 2.0 22 84 16 58 39 0 4 56 1.19
13554--13592 20 2.0 19 95 5 69 43 5 10 41 1.61
14104--14142 19 2.1 19 100 0 78 58 10 5 25 1.51
15433--15459 13 2.1 13 100 0 54 44 18 7 29 1.77
15464--15496 16 2.1 16 100 0 66 18 0 12 69 1.18
21923--21953 15 2.1 15 100 0 62 12 19 0 67 1.22
28471--28498 14 2.0 14 100 0 56 35 21 0 42 1.53
30254--30279 12 2.2 12 100 0 52 57 0 7 34 1.27
30459--30505 24 2.0 24 86 0 67 31 21 2 44 1.64
33375--33406 16 2.0 16 93 0 55 34 9 6 50 1.60
38288--38317 3 10.3 3 92 7 53 63 0 0 36 0.95
38243--38317 25 2.9 26 80 6 80 56 0 1 42 1.08
38243--38315 17 4.2 17 70 16 60 56 0 1 42 1.08
38338--38404 7 10.0 7 75 25 65 41 0 0 58 0.98
38344--38385 11 4.2 11 77 22 56 38 0 0 61 0.96
38338--38432 18 5.6 18 85 13 114 38 1 0 60 1.04
38343--38432 11 8.5 11 78 20 54 38 1 0 60 1.04
44991--45023 16 2.1 16 100 0 66 30 18 0 51 1.46
46476--46516 20 2.0 20 100 0 82 65 14 4 14 1.42
48366--48393 14 2.0 14 100 0 56 42 7 7 42 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48824--48853 15 2.0 15 93 0 51 63 0 6 30 1.20
49251--49288 19 2.0 19 100 0 76 31 0 15 52 1.43
49560--49587 14 2.0 14 100 0 56 28 14 21 35 1.92
50383--50450 34 2.0 34 97 0 127 14 22 11 51 1.74
50588--50621 17 2.0 17 100 0 68 52 11 5 29 1.61
56804--56829 13 2.0 13 100 0 52 46 7 7 38 1.61
59037--59063 14 1.9 14 100 0 54 29 0 7 62 1.22
61348--61388 13 3.2 13 86 13 59 56 0 19 24 1.42
61540--61566 13 2.1 13 100 0 54 62 0 7 29 1.22
61735--61775 16 2.5 16 96 4 73 56 0 0 43 0.99
61915--61966 11 4.5 11 81 11 52 48 0 0 51 1.00
61914--61970 16 3.7 16 73 23 59 49 0 0 50 1.00
63573--63598 12 2.2 12 100 0 52 42 7 0 50 1.31
66875--66912 19 2.0 19 100 0 76 10 26 0 63 1.27
66904--66947 22 2.0 22 100 0 88 31 9 9 50 1.65
68267--68291 12 2.1 12 100 0 50 44 8 16 32 1.76
68684--68723 19 2.1 19 100 0 80 10 10 15 65 1.48
69860--69884 12 2.1 12 100 0 50 60 0 16 24 1.36
70607--70644 12 3.2 12 100 0 76 52 7 7 31 1.59
71253--71279 13 2.1 13 100 0 54 70 0 0 29 0.88
72795--72826 14 2.2 15 94 5 57 43 0 0 56 0.99
74566--74592 13 2.1 13 100 0 54 33 22 0 44 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
79283--79310 13 2.2 13 100 0 56 60 0 21 17 1.36
83514--83551 9 4.0 9 93 6 58 36 0 0 63 0.95
85247--85305 20 3.0 20 100 0 118 35 10 18 35 1.85
91499--91609 21 5.1 21 85 3 114 12 21 9 56 1.63
91521--91609 21 4.2 21 88 0 124 12 21 7 58 1.59
93953--94045 18 5.2 17 88 5 123 32 6 26 34 1.82
93953--94045 36 2.6 36 86 10 136 32 6 26 34 1.82
100887--100921 17 2.1 17 100 0 70 31 17 11 40 1.85
101570--101635 33 2.0 33 100 0 132 39 15 12 33 1.84
101733--101782 21 2.4 22 83 16 70 12 8 0 80 0.92
102299--102346 8 6.1 8 77 22 57 20 12 0 66 1.24
102305--102346 18 2.3 18 95 0 75 21 11 0 66 1.23
102294--102323 13 2.3 13 100 0 60 13 16 0 70 1.18
102341--102380 6 7.2 6 86 13 59 35 0 15 50 1.44
102341--102384 11 4.1 11 94 2 72 34 0 15 50 1.45
112014--112101 45 1.9 46 95 2 160 45 1 26 27 1.61
113172--113264 20 4.4 20 74 18 75 59 0 1 39 1.05
113166--113242 14 5.8 14 76 14 74 58 0 0 41 0.98
113162--113245 38 2.2 37 83 14 107 58 0 0 41 0.98
113175--113265 34 2.6 35 83 10 98 58 0 1 40 1.05
115488--115512 13 1.9 13 100 0 50 0 8 0 92 0.40
115605--115641 18 2.1 18 100 0 74 43 5 0 51 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116457--116497 12 3.5 12 90 9 59 68 0 0 31 0.90
116456--116497 7 6.1 7 86 13 61 69 0 0 30 0.89
116456--116497 19 2.2 19 100 0 84 69 0 0 30 0.89
123193--123253 12 5.2 12 86 11 83 68 1 0 29 0.99
123184--123241 22 2.6 22 84 10 66 67 0 0 32 0.91
123200--123255 4 14.5 4 75 20 57 71 1 0 26 0.96
126321--126372 26 2.0 26 92 0 86 25 7 7 59 1.51
126657--126692 18 2.0 18 94 0 63 30 5 13 50 1.65
127319--127383 30 2.2 30 100 0 130 15 16 6 61 1.53
128486--128523 18 2.1 18 100 0 76 21 10 5 63 1.46
129668--129726 15 4.1 14 76 10 57 0 27 3 69 1.04
131970--132057 45 1.9 46 95 2 160 27 26 1 45 1.61
141691--141730 6 7.2 6 86 13 59 50 15 0 35 1.44
141687--141730 11 4.1 11 94 2 72 50 15 0 34 1.45
141725--141772 8 6.1 8 77 22 57 66 0 12 20 1.24
141725--141766 18 2.3 18 95 0 75 66 0 11 21 1.23
141748--141777 13 2.3 13 100 0 60 70 0 16 13 1.18
142289--142338 21 2.4 22 87 12 70 80 0 8 12 0.92
142436--142501 33 2.0 33 100 0 132 33 12 15 39 1.84
143150--143184 17 2.1 17 100 0 70 40 11 17 31 1.85
150026--150118 18 5.2 17 88 5 123 34 26 6 32 1.82
150026--150118 36 2.6 36 86 10 136 34 26 6 32 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
152462--152572 42 2.6 43 84 4 143 56 9 21 12 1.63
152462--152550 21 4.2 21 88 0 124 58 7 21 12 1.59
152483--152572 21 4.1 22 89 4 112 57 10 20 12 1.62
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Tables: 1
The End!