NC_072185.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_072185.1 Corydalis turtschaninovii voucher ESK21-189 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 195713
Tables: 1
This is table 1 of 1 ( 66 repeats found )
Click on indices to view alignment
Table Explanation
----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1824--1866 21 2.0 21 100 0 86 65 4 9 20 1.40
18281--18305 11 2.3 11 100 0 50 28 16 0 56 1.41
20377--20430 2 28.0 2 83 14 69 51 0 1 46 1.11
20367--20430 23 2.9 23 90 4 96 53 0 3 43 1.16
20626--20655 15 2.0 15 100 0 60 33 20 13 33 1.91
33278--33342 31 2.1 31 100 0 130 40 15 20 24 1.91
60485--60520 17 2.1 17 100 0 72 16 11 5 66 1.40
69739--69763 12 2.1 12 100 0 50 40 8 16 36 1.77
70901--70989 21 4.2 21 83 0 115 35 28 12 23 1.91
70901--70989 42 2.1 42 91 0 142 35 28 12 23 1.91
75802--75900 11 8.2 12 77 11 87 0 13 2 84 0.70
75838--75903 1 66.0 1 87 0 87 0 7 0 92 0.39
75808--75882 30 2.5 29 85 6 96 0 16 2 81 0.80
75911--75941 15 2.1 15 93 0 53 45 12 22 19 1.84
78777--78878 51 2.0 51 100 0 204 39 23 7 29 1.83
84352--84423 33 2.2 32 95 4 135 31 19 26 22 1.97
87109--87139 15 2.1 15 100 0 62 25 6 19 48 1.72
87282--87336 22 2.5 22 94 2 94 63 0 18 18 1.31
87952--88022 27 2.8 25 89 6 108 35 22 4 38 1.74
90973--91007 16 2.2 16 94 0 61 40 22 17 20 1.92
93132--93190 27 2.2 27 90 6 93 23 27 13 35 1.92
93146--93190 15 3.2 15 71 28 53 22 26 13 37 1.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93138--93422 21 13.0 21 81 11 317 21 23 16 38 1.93
93132--93199 27 2.5 27 83 9 86 25 25 14 35 1.94
93138--93393 111 2.3 111 85 7 342 21 23 16 37 1.93
93544--93601 24 2.6 21 75 15 62 12 25 12 50 1.74
93553--93638 24 3.3 24 77 19 91 10 22 13 53 1.70
93470--93605 21 6.2 21 67 13 85 16 25 13 44 1.85
93551--93632 30 3.0 29 82 13 102 10 24 13 51 1.73
99027--99060 17 2.0 17 100 0 68 41 5 35 17 1.74
100078--100116 19 2.1 19 100 0 78 20 15 25 38 1.92
118014--118039 13 2.0 13 100 0 52 23 7 23 46 1.78
120279--120315 17 2.2 17 100 0 74 40 27 8 24 1.83
132068--132099 16 2.0 16 93 0 55 62 9 25 3 1.40
136231--136510 24 11.7 24 95 1 426 24 19 19 36 1.95
136809--136867 24 2.5 24 91 0 91 8 15 28 47 1.74
137144--137231 18 4.9 18 94 5 160 11 4 28 55 1.55
139361--139392 15 2.1 15 100 0 64 43 6 25 25 1.77
140007--140109 12 9.1 12 66 23 53 6 29 2 61 1.36
140010--140089 30 2.7 30 90 0 124 6 27 3 62 1.36
140026--140107 18 4.9 18 72 17 77 6 29 2 62 1.32
140007--140109 30 3.4 29 80 9 109 6 29 2 61 1.36
142917--142950 15 2.3 15 100 0 68 11 0 5 82 0.83
142919--142956 20 1.9 20 84 10 51 13 0 5 81 0.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145543--145647 30 3.5 31 79 10 110 60 2 28 7 1.38
145547--145602 18 3.1 18 86 0 85 66 1 26 5 1.23
145545--145614 12 5.8 12 71 15 56 64 1 28 5 1.25
146262--146293 15 2.1 15 100 0 64 25 25 6 43 1.77
148423--148510 18 4.9 18 94 5 160 55 28 4 11 1.55
148787--148845 24 2.5 24 91 0 91 47 28 15 8 1.74
149144--149423 24 11.7 24 96 1 426 36 19 19 24 1.95
153555--153586 16 2.0 16 93 0 55 3 25 9 62 1.40
165339--165375 17 2.2 17 100 0 74 24 8 27 40 1.83
167615--167640 13 2.0 13 100 0 52 46 23 7 23 1.78
185538--185576 19 2.1 19 100 0 78 38 25 15 20 1.92
186594--186627 17 2.0 17 100 0 68 17 35 5 41 1.74
192049--192184 21 6.2 21 70 13 85 44 13 25 16 1.85
192016--192096 24 3.1 25 79 17 92 51 13 23 11 1.73
192232--192516 21 13.0 21 80 12 317 38 16 23 21 1.93
192283--192481 90 2.3 90 84 11 263 38 16 23 21 1.92
192260--192516 111 2.3 111 84 7 344 38 16 23 21 1.93
192455--192514 27 2.2 26 82 8 84 35 16 23 25 1.95
192464--192508 15 3.2 15 71 28 53 37 13 26 22 1.91
192464--192522 27 2.2 27 90 6 93 35 13 27 23 1.92
192401--192529 48 2.8 46 75 19 128 36 14 24 24 1.93
194647--194681 16 2.2 16 94 0 61 20 17 22 40 1.92
----------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!