NC_072194.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_072194.1 Corydalis ternata voucher ESK22-077 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 187819
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10603--10817 107 2.0 109 93 1 371 31 25 15 26 1.96
10938--11253 90 3.5 90 95 0 560 17 28 31 23 1.97
12167--12436 69 3.8 69 70 13 233 34 14 22 28 1.94
12106--12412 144 2.1 143 89 5 485 33 15 21 28 1.94
13278--13386 21 5.2 21 98 0 200 21 16 33 28 1.95
14010--14049 16 2.5 16 100 0 80 27 30 5 37 1.78
17193--17268 20 3.8 20 96 0 125 26 10 27 35 1.89
52465--52489 12 2.1 12 100 0 50 20 40 16 24 1.91
75404--75477 21 3.5 21 79 0 85 33 24 10 31 1.90
75389--75477 42 2.1 42 89 0 133 34 26 11 26 1.90
78459--78483 12 2.1 12 100 0 50 24 16 40 20 1.91
78828--78868 19 2.2 19 100 0 82 19 4 9 65 1.40
78716--78971 133 1.9 134 97 0 487 18 16 19 45 1.86
78960--79006 12 4.0 12 73 15 53 10 8 2 78 1.04
83506--83530 12 2.1 12 100 0 50 8 16 24 52 1.70
84633--84802 93 1.8 93 85 2 243 28 24 20 26 1.99
90248--90294 24 2.0 24 87 8 69 29 34 14 21 1.93
98764--98935 27 7.0 27 83 11 116 23 23 14 37 1.92
98772--98965 42 4.0 51 86 9 172 23 22 15 38 1.92
98863--99123 21 12.4 21 91 2 352 21 21 15 40 1.90
99233--99272 21 1.9 21 94 0 71 15 25 17 42 1.88
99253--99300 24 2.0 24 87 0 69 16 22 12 47 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99277--99332 30 1.9 30 88 3 87 14 21 10 53 1.70
101601--101682 36 2.2 36 89 6 121 31 9 32 25 1.88
102945--102975 15 2.1 15 100 0 62 41 6 32 19 1.77
119459--119483 12 2.1 12 100 0 50 20 40 16 24 1.91
124310--124358 24 2.2 22 82 13 57 30 14 10 44 1.78
126685--127000 90 3.5 90 95 0 560 23 31 28 17 1.97
142408--142476 15 5.0 15 67 25 62 26 10 28 34 1.89
142388--142500 39 2.9 39 97 0 208 24 12 25 37 1.91
142462--142758 24 12.4 24 90 0 315 26 17 19 36 1.94
142465--142758 48 6.1 48 91 0 363 26 18 19 36 1.94
143055--143309 30 8.5 30 91 1 404 11 14 31 43 1.80
143571--143622 18 2.9 18 100 0 104 9 0 34 55 1.32
146346--146370 12 2.1 12 100 0 50 8 32 0 60 1.26
146338--146492 51 3.0 51 98 0 292 20 22 10 46 1.81
146397--146421 12 2.1 12 100 0 50 8 32 0 60 1.26
148372--148687 109 2.9 109 93 0 524 36 12 23 27 1.91
156114--156429 90 3.5 90 95 0 560 17 28 31 23 1.97
163631--163655 12 2.1 12 100 0 50 24 16 40 20 1.91
180139--180169 15 2.1 15 100 0 62 19 32 6 41 1.77
183814--183906 21 4.1 24 73 13 72 47 13 22 16 1.82
183991--184251 21 12.4 21 91 2 320 40 15 21 21 1.90
184179--184350 27 7.0 27 83 11 116 37 14 23 23 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
184230--184342 54 2.1 54 88 3 165 34 15 23 26 1.95
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Tables: 1
The End!