NC_072212.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_072212.1 Eupatorium chinense chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  151393

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  12364--12389                       12       2.2      12          100       0         52      57   7    15   19   1.62

  29880--29921                       22       2.0      22          86        13        61      54   2    14   28   1.52

  34510--34535                       13       2.0      13          100       0         52      38   7    23   30   1.83

  47292--47346                       18       3.3      18          76        23        75      41   12   14   30   1.83

  47290--47352                       31       2.0      31          100       0         126     44   12   12   30   1.80

  51164--51198                       15       2.3      15          90        0         52      34   14   14   37   1.86

  58051--58080                       15       2.0      15          93        0         51      56   6    10   26   1.57

  58289--58326                       20       1.9      20          89        10        60      47   5    7    39   1.55

  58311--58338                       12       2.3      12          100       0         56      57   0    7    35   1.26

  65812--65843                       15       2.1      15          100       0         64      53   6    0    40   1.26

  66972--67012                       21       2.0      21          90        0         64      31   21   9    36   1.86

  70158--70187                       16       1.9      15          93        6         51      53   6    3    36   1.44

  90315--90359                       18       2.5      18          100       0         90      28   11   26   33   1.91

  92799--92845                       23       2.0      23          100       0         94      53   12   4    29   1.58

  105991--106052                     32       1.9      32          93        0         106     41   22   8    27   1.82

  112356--112396                     20       2.0      20          95        0         73      29   7    0    63   1.21

  118600--118637                     19       2.0      19          94        0         67      39   23   5    31   1.77

  122880--122919                     21       1.9      21          100       0         80      42   35   2    20   1.65

  128386--128447                     32       1.9      32          93        0         106     27   8    22   41   1.82

  141593--141639                     23       2.0      23          100       0         94      29   4    12   53   1.58

  144079--144123                     18       2.5      18          100       0         90      33   26   11   28   1.91
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!