NC_072567.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_072567.1 Bolbostemma paniculatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160781
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140--168 2 15.0 2 92 7 51 51 0 0 48 1.00
143--169 13 2.1 13 100 0 54 55 0 0 44 0.99
1847--1891 23 1.9 24 86 4 65 44 4 2 48 1.35
4740--4783 23 1.9 23 85 0 61 43 18 6 31 1.76
5057--5114 24 2.4 23 80 11 71 63 0 5 31 1.16
8457--8504 12 4.2 12 76 10 55 47 0 4 47 1.21
8454--8504 17 3.0 17 88 11 86 47 0 5 47 1.26
8459--8501 22 2.0 22 85 0 59 48 0 4 46 1.22
8457--8513 17 3.4 16 81 11 69 45 1 3 49 1.29
11384--11430 19 2.5 19 85 0 58 48 0 2 48 1.13
12204--12237 16 2.1 16 100 0 68 50 0 5 44 1.26
16998--17022 11 2.3 11 100 0 50 28 0 8 64 1.22
31556--31589 17 2.0 17 88 11 52 47 2 20 29 1.65
31944--31990 18 2.7 18 83 3 60 42 21 8 27 1.81
34344--34385 17 2.4 18 84 8 59 23 11 2 61 1.42
36594--36628 16 2.1 16 89 5 52 34 14 5 45 1.68
36682--36729 24 2.0 24 100 0 96 29 16 4 50 1.64
40076--40113 19 2.0 19 100 0 76 68 15 5 10 1.36
41146--41199 21 2.8 20 86 13 69 53 1 3 40 1.29
47071--47122 15 3.5 14 82 12 59 30 1 0 67 1.02
47083--47126 16 2.8 16 100 0 88 34 0 0 65 0.93
52059--52105 11 4.5 11 78 10 53 27 4 0 68 1.08
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
52147--52177 15 2.0 16 93 6 55 38 12 0 48 1.42
56617--56655 9 4.3 9 83 0 51 51 0 0 48 1.00
56625--56680 18 3.3 18 80 14 73 55 0 0 44 0.99
56620--56672 15 3.3 15 80 17 54 56 0 0 43 0.99
56645--56678 15 2.3 15 100 0 68 58 0 0 41 0.98
56620--56680 33 1.9 31 86 6 86 54 0 0 45 1.00
57765--57791 13 2.1 13 100 0 54 22 14 0 62 1.31
64443--64473 16 1.9 16 100 0 62 80 6 0 12 0.89
64649--64682 12 3.0 12 91 8 54 61 8 0 29 1.26
70818--70858 16 2.5 17 84 11 59 41 0 0 58 0.98
83264--83295 16 2.0 16 100 0 64 31 6 6 56 1.49
88337--88381 21 2.1 21 91 0 72 13 13 20 53 1.72
94649--94731 21 3.7 23 75 18 77 13 22 9 54 1.68
94671--94738 21 3.2 21 82 0 82 11 22 7 58 1.57
97097--97153 18 3.2 18 94 0 105 31 5 28 35 1.79
97097--97153 9 6.3 9 72 0 51 31 5 28 35 1.79
113306--113371 32 2.1 32 97 0 123 40 24 9 25 1.84
115567--115602 18 2.0 18 100 0 72 44 11 11 33 1.75
131379--131415 16 2.4 16 86 4 58 67 0 5 27 1.12
135198--135233 18 2.0 18 100 0 72 33 11 11 44 1.75
135202--135242 18 2.3 18 87 8 57 36 7 9 46 1.65
137429--137494 32 2.1 32 97 0 123 25 9 24 40 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
153647--153703 18 3.2 18 94 0 105 35 28 5 31 1.79
153647--153703 9 6.3 9 72 0 51 35 28 5 31 1.79
156063--156151 21 4.1 21 81 5 81 56 8 22 12 1.64
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Tables: 1
The End!