NC_072669.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_072669.1 Tussilago farfara chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150300
Tables: 1
This is table 1 of 1 ( 25 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3777--3816 20 2.0 20 100 0 80 40 10 10 40 1.72
9090--9116 13 2.1 13 100 0 54 48 14 7 29 1.71
31177--31214 18 2.0 20 85 10 53 36 0 15 47 1.46
31772--31801 14 2.1 14 100 0 60 66 0 20 13 1.24
43493--43542 25 2.0 25 100 0 100 8 36 16 40 1.77
46158--46202 21 2.1 21 95 0 81 53 4 6 35 1.47
56672--56727 21 2.4 23 82 14 62 33 8 12 44 1.73
58405--58436 16 2.0 16 100 0 64 31 12 6 50 1.65
66347--66387 21 2.0 21 95 0 73 31 24 9 34 1.88
72330--72358 14 2.1 14 100 0 58 20 0 13 65 1.26
78897--78928 16 2.0 16 93 0 55 21 6 15 56 1.62
82234--82278 23 2.0 23 95 0 81 57 6 0 35 1.25
89564--89615 9 5.8 9 83 0 68 32 5 23 38 1.78
89564--89615 27 1.9 27 92 0 86 32 5 23 38 1.78
89591--89631 18 2.3 18 91 0 64 29 12 24 34 1.91
91813--91839 12 2.2 12 100 0 54 29 22 7 40 1.81
115609--115655 23 2.0 23 91 0 76 27 10 10 51 1.70
122070--122109 21 1.9 21 94 0 71 42 32 0 25 1.55
123152--123189 11 3.4 11 85 14 51 15 2 2 78 0.97
125128--125172 18 2.5 18 96 0 81 11 15 4 68 1.34
125245--125282 18 2.1 18 90 0 58 0 28 0 71 0.87
140957--140983 12 2.2 12 100 0 54 40 7 22 29 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
143173--143213 18 2.3 18 91 0 64 34 24 12 29 1.91
143189--143240 9 5.8 9 83 0 68 38 23 5 32 1.78
143189--143240 27 1.9 27 92 0 86 38 23 5 32 1.78
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Tables: 1
The End!