NC_073099.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_073099.1 Campsis radicans chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153630
Tables: 1
This is table 1 of 1 ( 54 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6671--6708 15 2.5 15 86 0 58 47 2 2 47 1.30
36244--36282 18 2.1 19 95 4 71 35 5 17 41 1.72
48221--48252 14 2.3 14 94 0 55 56 9 12 21 1.64
48266--48296 16 1.9 16 100 0 62 58 6 12 22 1.58
48269--48331 25 2.5 26 92 2 101 60 3 15 20 1.49
48351--48388 13 2.9 13 88 7 51 23 13 0 63 1.30
49906--49969 33 1.9 33 100 0 128 45 18 12 23 1.84
51810--51871 21 3.0 21 92 0 106 32 11 27 29 1.91
60087--60133 21 2.2 21 96 0 85 29 12 23 34 1.92
61553--61634 33 2.5 33 97 0 155 29 32 15 21 1.95
61794--61820 12 2.2 12 100 0 54 51 7 7 33 1.58
61860--61910 24 2.2 24 82 3 59 29 21 19 29 1.98
62160--62421 15 16.9 15 76 12 190 33 17 6 42 1.74
62160--62421 30 8.4 30 76 13 217 33 17 6 42 1.74
62209--62253 21 2.1 21 91 0 72 37 11 4 46 1.60
62186--62416 51 4.5 51 85 9 276 33 18 6 42 1.75
62260--62304 21 2.1 21 91 0 72 37 11 4 46 1.60
62243--62468 36 6.4 36 71 16 118 32 19 5 42 1.75
62267--62361 21 4.8 21 71 19 78 31 21 5 42 1.75
62229--62494 123 2.2 121 86 6 358 31 19 6 42 1.76
62430--62489 21 2.9 21 90 5 86 25 28 6 40 1.80
62546--62613 21 3.2 21 79 4 75 29 26 7 36 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63017--63275 126 2.1 126 95 0 466 27 18 12 40 1.87
68399--68438 14 2.7 15 88 7 64 57 10 7 25 1.57
77203--77240 17 2.3 17 95 4 69 42 5 18 34 1.73
79865--79920 24 2.3 24 100 0 112 33 26 14 25 1.94
86762--86799 19 2.0 19 100 0 76 52 10 0 36 1.36
86790--86820 16 1.9 16 100 0 62 64 6 3 25 1.33
89297--89344 24 2.1 22 84 7 60 14 20 10 54 1.70
91716--91789 27 2.9 26 82 6 89 32 6 31 29 1.83
91716--91788 24 2.9 24 81 6 83 32 6 30 30 1.84
91767--91800 15 2.3 15 94 0 59 32 5 26 35 1.81
91730--91827 42 2.3 42 83 10 128 30 8 27 33 1.86
92883--92956 33 2.2 33 92 0 121 32 18 39 9 1.83
99609--99654 23 2.0 23 91 0 74 23 8 6 60 1.49
99647--99681 17 2.0 18 88 5 54 28 0 20 51 1.47
107592--107652 31 2.0 31 93 0 104 40 21 9 27 1.85
109821--109862 21 2.0 21 100 0 84 33 9 14 42 1.78
111915--111953 20 2.0 20 85 10 53 56 23 0 20 1.42
124444--124483 18 2.5 15 78 21 53 15 17 2 65 1.39
124449--124485 18 2.1 18 100 0 74 16 16 5 62 1.51
124576--124610 12 2.9 12 100 0 70 0 25 8 65 1.21
128377--128418 21 2.0 21 100 0 84 42 14 9 33 1.78
130587--130647 31 2.0 31 93 0 104 27 9 21 40 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
138558--138592 17 2.0 18 88 5 54 51 20 0 28 1.47
138585--138630 23 2.0 23 91 0 74 60 6 8 23 1.49
145283--145356 33 2.2 33 92 0 121 9 39 18 32 1.83
146439--146472 15 2.3 15 94 0 59 35 26 5 32 1.81
146412--146509 42 2.3 43 81 11 130 33 27 8 30 1.86
146454--146523 24 2.8 24 82 6 77 30 31 7 31 1.84
146450--146523 27 2.9 26 82 6 89 29 31 6 32 1.83
148853--148942 21 4.1 22 69 13 60 54 11 20 14 1.70
151419--151449 16 1.9 16 100 0 62 25 3 6 64 1.33
151440--151477 19 2.0 19 100 0 76 36 0 10 52 1.36
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Tables: 1
The End!