NC_073505.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_073505.1 Senecio scandens chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 150439
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8246--8272 12 2.2 12 100 0 54 48 7 0 44 1.31
9329--9390 23 2.7 23 97 0 115 59 12 17 9 1.59
25567--25599 15 2.2 15 100 0 66 36 12 6 45 1.66
31637--31721 25 3.4 25 75 16 86 34 7 2 56 1.39
31864--31891 13 2.2 13 100 0 56 64 0 21 14 1.29
35895--35930 18 2.0 18 88 0 54 30 8 22 38 1.83
47819--47864 22 2.1 22 100 0 92 28 21 8 41 1.83
56925--56980 21 2.4 23 82 14 62 33 8 12 44 1.73
58536--58595 27 2.3 27 88 5 88 45 5 3 46 1.41
63920--63948 14 2.1 14 100 0 58 44 0 6 48 1.29
66721--66761 19 2.3 19 87 8 59 51 7 0 41 1.30
66867--66907 21 2.0 21 95 0 73 31 24 9 34 1.88
74308--74343 11 3.5 11 92 7 58 88 5 0 5 0.61
74308--74350 11 3.9 11 85 11 52 88 4 0 6 0.63
90185--90227 18 2.6 16 86 13 61 32 4 20 41 1.73
90196--90250 9 6.1 9 82 0 74 32 5 23 38 1.78
90196--90263 18 3.8 18 90 0 73 32 7 23 36 1.83
90196--90250 27 2.0 27 92 0 92 32 5 23 38 1.78
92445--92471 12 2.2 12 100 0 54 29 22 7 40 1.81
97350--97391 13 3.5 13 75 24 56 21 4 0 73 1.01
97348--97403 22 2.5 23 97 2 105 23 3 1 71 1.11
108577--108667 45 2.0 45 87 4 130 43 12 13 30 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
111298--111337 21 1.9 21 100 0 80 20 2 35 42 1.65
122744--122773 14 2.1 14 100 0 60 60 13 0 26 1.34
125663--125690 14 2.0 14 100 0 56 28 7 7 57 1.52
136177--136218 13 3.5 13 75 24 56 73 0 4 21 1.01
136165--136220 22 2.5 23 97 2 105 71 1 3 23 1.11
141097--141123 12 2.2 12 100 0 54 40 7 22 29 1.81
143318--143372 27 2.0 27 92 0 92 38 23 5 32 1.78
143318--143372 9 6.1 9 82 0 74 38 23 5 32 1.78
143305--143370 18 3.7 18 89 0 78 37 22 7 31 1.82
143340--143383 18 2.6 17 89 10 65 43 20 4 31 1.72
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Tables: 1
The End!