NC_077566.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_077566.1 Dioscorea spongiosa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153947
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9046--9070 13 1.9 13 100 0 50 40 0 24 36 1.55
12225--12256 16 2.0 16 93 0 55 15 12 3 68 1.32
12347--12394 19 2.5 20 79 3 53 35 2 0 62 1.07
28745--28822 41 1.9 41 89 5 122 21 8 3 65 1.37
28830--28863 9 3.9 9 92 3 52 50 0 5 44 1.26
32298--32343 24 1.9 24 86 0 65 43 4 15 36 1.66
36234--36266 16 2.0 17 88 5 50 42 15 6 36 1.71
46246--46278 17 1.9 17 93 0 57 42 15 15 27 1.86
46941--46982 15 2.9 15 79 17 52 47 0 0 52 1.00
49374--49415 21 2.0 21 100 0 84 33 9 9 47 1.68
56650--56708 17 3.5 17 90 0 91 44 18 18 18 1.88
63406--63450 16 2.8 16 87 12 58 71 0 2 26 0.98
63411--63473 12 5.1 13 75 13 53 63 1 1 33 1.13
63411--63479 11 5.8 11 74 15 57 63 1 1 33 1.12
65428--65459 15 2.1 15 100 0 64 46 6 12 34 1.67
66550--66604 27 2.0 27 96 0 101 54 12 0 32 1.38
67661--67698 14 2.7 14 80 15 51 57 15 0 26 1.38
79061--79109 24 2.0 24 92 0 80 26 30 14 28 1.95
80803--80832 15 2.0 15 100 0 60 46 13 20 20 1.83
83649--83679 14 2.1 15 94 5 55 70 0 3 25 1.02
88851--88919 21 3.3 21 97 0 129 13 30 8 47 1.72
100243--100280 18 2.1 18 100 0 76 50 10 5 34 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120852--120887 9 4.1 9 85 7 56 55 13 8 22 1.65
120855--120887 17 1.9 17 100 0 66 54 15 6 24 1.63
121098--121123 13 2.0 13 100 0 52 15 7 23 53 1.67
127865--127889 12 2.1 12 100 0 50 16 16 20 48 1.82
137637--137674 18 2.1 18 100 0 76 34 5 10 50 1.59
148998--149066 21 3.3 21 97 0 129 47 8 30 13 1.72
148998--149087 21 4.1 21 92 4 126 48 10 27 13 1.74
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Tables: 1
The End!