NC_077620.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_077620.1 Bupleurum marginatum voucher CQ2021090202 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155539
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9275--9300 13 2.0 13 100 0 52 53 7 15 23 1.67
9557--9583 13 2.1 13 100 0 54 44 0 0 55 0.99
13682--13733 16 3.1 17 81 10 63 46 3 0 50 1.20
47337--47363 13 2.1 13 100 0 54 51 14 7 25 1.68
48847--48872 6 4.3 6 100 0 52 30 0 53 15 1.42
52157--52181 13 1.9 13 100 0 50 32 4 16 48 1.64
58638--58669 15 2.1 15 94 0 55 28 12 9 50 1.71
60233--60279 24 1.9 25 87 12 71 53 4 4 38 1.40
61834--61878 22 2.0 22 100 0 90 35 13 17 33 1.89
66637--66672 17 2.1 17 94 0 63 36 11 13 38 1.81
69154--69194 21 2.0 21 90 0 64 29 24 9 36 1.87
89593--89660 21 3.2 21 77 8 75 11 22 8 57 1.61
90761--90805 15 3.0 15 96 0 81 26 33 15 24 1.95
92031--92083 9 5.9 9 72 0 52 30 3 28 37 1.75
92038--92096 18 3.3 18 95 0 100 30 6 28 33 1.83
94758--94785 14 2.0 14 100 0 56 42 14 7 35 1.73
99930--99975 23 2.0 23 86 0 65 26 8 6 58 1.52
100238--100275 20 1.9 20 100 0 76 15 18 31 34 1.92
108137--108202 32 2.1 32 97 0 123 40 24 9 25 1.84
113331--113374 20 2.2 20 88 8 63 54 29 0 15 1.42
132689--132754 32 2.1 32 97 0 123 25 9 24 40 1.84
140621--140658 20 1.9 20 100 0 76 34 31 18 15 1.92
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140921--140966 23 2.0 23 86 0 65 58 6 8 26 1.52
146111--146138 14 2.0 14 100 0 56 35 7 14 42 1.73
148800--148858 18 3.3 18 95 0 100 33 28 6 30 1.83
148813--148865 9 5.9 9 72 0 52 37 28 3 30 1.75
150091--150135 15 3.0 15 96 0 81 24 15 33 26 1.95
151254--151307 21 2.6 21 82 11 74 59 11 20 9 1.59
151237--151306 21 3.4 19 72 16 59 57 8 22 11 1.61
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Tables: 1
The End!