NC_077664.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_077664.1 Citrus unshiu chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160699
Tables: 1
This is table 1 of 1 ( 38 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6594--6645 20 2.8 19 86 11 65 65 1 11 21 1.34
8849--8878 7 4.3 7 100 0 60 86 0 0 13 0.57
8965--8989 12 2.1 12 100 0 50 60 0 24 16 1.36
9002--9032 16 1.9 16 93 0 53 48 9 12 29 1.73
31928--31965 17 2.2 17 100 0 76 34 10 0 55 1.34
34726--34753 14 2.0 14 100 0 56 50 7 21 21 1.72
39253--39282 15 2.0 15 93 0 51 43 3 0 53 1.17
39838--39882 9 5.5 8 87 12 65 46 0 0 53 1.00
39838--39882 4 11.0 4 86 13 65 46 0 0 53 1.00
39838--39882 13 3.6 13 88 11 76 46 0 0 53 1.00
39838--39888 11 4.6 11 79 13 52 47 0 1 50 1.12
40542--40567 12 2.2 12 100 0 52 65 0 19 15 1.27
45760--45793 16 2.1 16 94 0 59 64 5 2 26 1.30
58283--58324 21 2.0 21 100 0 84 23 19 9 47 1.78
61285--61326 18 2.3 18 100 0 84 45 11 23 19 1.83
62769--62817 25 2.0 24 92 4 80 44 8 4 42 1.53
72212--72250 21 1.9 21 89 5 62 33 25 10 30 1.89
81332--81362 16 1.9 16 100 0 62 12 9 0 77 0.99
85308--85343 12 3.0 12 92 8 56 91 0 5 2 0.49
87710--87759 22 2.3 22 85 0 64 18 2 4 76 1.04
87701--87747 22 2.0 23 92 8 78 17 2 2 78 0.94
88188--88221 9 3.8 9 96 0 59 32 14 0 52 1.42
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89122--89167 23 2.0 23 100 0 92 47 17 8 26 1.76
93300--93374 21 3.2 24 70 16 68 10 24 8 57 1.59
95748--95801 18 3.0 18 97 0 99 29 9 27 33 1.88
103556--103588 16 2.0 17 94 5 59 6 9 0 84 0.76
104093--104130 18 2.1 18 95 0 67 23 7 5 63 1.42
112228--112289 32 1.9 32 96 0 115 38 24 9 27 1.86
122276--122304 13 2.2 13 100 0 58 68 6 6 17 1.34
122477--122528 27 2.0 25 92 7 86 73 7 1 17 1.16
125055--125094 19 2.1 19 100 0 80 25 15 10 50 1.74
130962--131005 20 2.2 20 100 0 88 36 4 4 54 1.41
136329--136390 32 1.9 32 96 0 115 27 9 24 38 1.86
144488--144525 18 2.1 18 95 0 67 63 5 7 23 1.42
145030--145062 16 2.0 17 94 5 59 84 0 9 6 0.76
152817--152870 18 3.0 18 97 0 99 33 27 9 29 1.88
159451--159496 23 2.0 23 100 0 92 26 8 17 47 1.76
160397--160430 9 3.8 9 96 0 59 52 0 14 32 1.42
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Tables: 1
The End!