NC_079661.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_079661.1 Phyla nodiflora voucher MH178191 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154341
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
534--592 9 6.6 9 79 14 59 8 47 0 44 1.33
528--585 18 3.2 18 82 4 73 8 48 0 43 1.34
528--592 27 2.4 27 92 0 103 9 47 0 43 1.35
2960--3020 31 2.0 31 93 0 104 27 9 21 40 1.85
10942--10976 17 2.0 18 94 5 63 48 22 0 28 1.51
10969--11014 23 2.0 23 86 0 65 56 10 10 21 1.64
17632--17689 18 3.2 18 75 0 62 25 32 6 34 1.83
21343--21391 24 2.0 24 92 0 80 34 18 16 30 1.93
21469--21549 42 1.9 42 85 5 110 58 7 20 13 1.60
21469--21550 21 3.9 21 77 6 85 57 7 21 13 1.61
21554--21588 12 2.9 12 91 0 52 65 11 17 5 1.43
21626--21656 15 2.1 15 93 0 53 48 29 3 19 1.64
23618--23666 16 3.4 16 69 30 56 24 8 16 51 1.71
23602--23684 26 3.2 26 94 1 139 21 9 14 54 1.69
23670--23718 21 2.3 21 89 6 73 24 14 12 48 1.77
32974--32999 12 2.2 12 100 0 52 53 23 7 15 1.67
39408--39468 15 4.1 15 82 0 77 40 3 42 13 1.60
39413--39481 30 2.3 30 87 2 113 42 5 40 11 1.65
39426--39476 15 3.4 15 83 0 75 43 7 35 13 1.73
41505--41566 21 3.0 21 97 0 115 33 9 27 29 1.88
44222--44252 13 2.3 14 94 5 55 29 16 9 45 1.79
49562--49601 21 1.9 21 100 0 80 30 20 20 30 1.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51235--51358 42 3.0 42 91 2 196 8 25 6 59 1.51
52192--52241 21 2.4 21 86 6 66 22 18 16 44 1.87
52213--52276 33 1.9 33 87 6 94 20 17 14 48 1.81
61671--61698 13 2.2 13 100 0 56 78 7 7 7 1.09
61726--61753 14 2.0 14 100 0 56 28 7 21 42 1.79
63502--63539 19 2.0 19 100 0 76 47 10 5 36 1.61
65464--65509 23 2.0 23 100 0 92 21 21 0 56 1.42
65644--65673 10 3.0 10 100 0 60 50 20 10 20 1.76
67103--67145 21 2.0 21 100 0 86 72 4 18 4 1.20
104579--104610 15 2.1 15 94 0 55 34 9 28 28 1.88
104683--104724 14 3.0 14 86 10 59 19 19 14 47 1.82
113423--113492 26 2.4 31 75 22 96 54 11 11 22 1.68
113436--113518 26 3.2 26 94 1 139 54 14 9 21 1.69
113454--113502 16 3.4 16 69 30 56 51 16 8 24 1.71
115464--115494 15 2.1 15 93 0 53 19 3 29 48 1.64
115532--115566 12 2.9 12 91 0 52 5 17 11 65 1.43
115570--115651 21 3.9 21 77 6 85 13 21 7 57 1.61
115571--115651 42 1.9 42 85 5 110 13 20 7 58 1.60
115729--115777 24 2.0 24 92 0 80 30 16 18 34 1.93
119431--119496 18 3.7 18 72 0 51 34 6 31 27 1.81
126144--126178 17 2.0 18 94 5 63 28 0 22 48 1.51
134100--134160 31 2.0 31 93 0 104 40 21 9 27 1.85
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136528--136592 27 2.4 27 92 0 103 43 0 47 9 1.35
136535--136592 18 3.2 18 85 0 71 43 0 48 8 1.34
136535--136592 9 6.4 9 80 7 64 43 0 48 8 1.34
138761--138799 20 2.0 20 85 10 53 56 23 0 20 1.42
151499--151534 18 2.0 18 94 0 63 36 30 0 33 1.58
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Tables: 1
The End!