NC_079708.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_079708.1 Borassus flabellifer voucher N_SC015 (IBSC) chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160018
Tables: 1
This is table 1 of 1 ( 117 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
15--50 18 2.0 18 100 0 72 38 5 11 44 1.63
6852--6876 12 2.1 12 100 0 50 28 16 24 32 1.96
8498--8591 22 4.4 21 73 17 70 23 4 0 72 1.02
8544--8590 7 6.6 7 79 13 51 27 2 0 70 0.99
8509--8588 12 6.9 12 76 20 64 22 5 0 72 1.04
8534--8581 22 2.3 20 89 10 71 25 4 0 70 1.04
8502--8591 12 8.0 12 72 20 52 24 4 0 71 1.05
8574--8663 20 4.4 21 77 13 89 44 0 1 54 1.07
8574--8663 4 24.5 4 70 17 52 44 0 1 54 1.07
8574--8663 6 16.3 6 67 16 52 44 0 1 54 1.07
8567--8663 14 6.7 15 72 13 62 43 0 1 55 1.06
8585--8683 18 5.5 18 73 10 69 50 0 1 48 1.07
8667--8713 23 2.0 23 100 0 94 61 0 8 29 1.25
8749--8796 14 3.1 14 78 21 60 58 6 0 35 1.23
8758--8801 18 2.4 19 92 7 81 59 4 0 36 1.18
9083--9127 7 6.9 7 83 16 53 44 6 0 48 1.29
9076--9149 13 5.8 13 76 21 68 43 6 0 50 1.29
9097--9190 9 10.8 8 71 26 50 46 3 0 50 1.17
9098--9167 19 3.5 21 75 16 60 47 4 0 48 1.21
9078--9178 15 6.3 16 76 20 79 45 3 0 50 1.20
9090--9187 20 4.9 20 79 12 96 46 3 0 50 1.17
9081--9187 6 18.5 6 73 22 88 46 3 0 49 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9181--9219 13 3.0 13 92 0 60 25 0 0 74 0.82
9288--9312 12 2.1 12 100 0 50 40 8 8 44 1.63
10563--10621 16 3.7 16 97 0 109 28 11 5 54 1.58
13201--13250 17 2.6 21 72 24 63 12 8 10 70 1.35
13206--13249 17 2.6 17 100 0 88 11 6 9 72 1.27
14340--14397 29 2.0 30 93 3 100 62 1 17 18 1.42
17333--17388 28 2.0 28 96 0 103 30 10 0 58 1.32
17483--17511 15 1.9 15 100 0 58 27 13 20 37 1.91
27939--27980 21 2.0 21 100 0 84 42 9 9 38 1.70
28621--28663 17 2.6 17 74 3 52 48 0 16 34 1.46
30472--30509 18 2.1 18 100 0 76 28 15 15 39 1.89
30524--30588 18 3.4 19 83 14 80 50 3 0 46 1.17
30808--30867 16 3.6 17 88 6 88 40 6 6 46 1.56
30795--30873 16 5.1 16 85 10 76 44 5 6 44 1.51
33031--33068 18 2.1 18 95 0 67 39 13 15 31 1.86
33592--33623 15 2.1 15 100 0 64 43 6 12 37 1.68
36901--36943 21 2.0 21 95 0 77 37 16 9 37 1.81
38529--38554 13 2.0 13 100 0 52 38 7 0 53 1.30
43630--43682 26 2.0 26 100 0 106 35 22 7 33 1.83
46580--46610 16 1.9 16 93 0 53 32 22 6 38 1.80
47928--47958 14 2.2 14 94 0 53 35 9 0 54 1.33
48012--48041 15 2.0 15 100 0 60 33 6 6 53 1.53
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48044--48075 15 2.1 15 100 0 64 40 6 12 40 1.68
48113--48140 14 2.0 14 100 0 56 35 14 0 50 1.43
48189--48237 24 2.0 24 96 0 89 53 0 4 42 1.20
49354--49378 12 2.1 12 100 0 50 16 36 0 48 1.46
52564--52611 20 2.8 16 75 22 51 54 10 10 25 1.66
52569--52610 20 2.1 20 100 0 84 57 9 9 23 1.60
52612--52647 14 2.5 14 95 4 63 55 0 5 38 1.23
52778--52817 21 2.0 20 85 5 53 60 0 10 30 1.30
52776--52829 28 1.9 28 100 0 108 59 0 11 29 1.32
52833--52870 17 2.4 16 91 8 60 76 2 5 15 1.08
52833--52870 16 2.4 17 86 8 53 76 2 5 15 1.08
52824--52877 27 2.0 27 82 13 67 74 1 7 16 1.14
52873--52897 11 2.3 11 100 0 50 56 0 0 44 0.99
54001--54029 13 2.1 14 93 6 51 13 0 6 79 0.93
59590--59621 16 2.0 16 100 0 64 37 25 0 37 1.56
61934--61964 16 1.9 16 93 0 53 77 0 6 16 0.97
62230--62260 16 1.9 16 100 0 62 32 12 0 54 1.38
62336--62472 14 10.8 12 72 18 84 51 0 0 48 1.00
62343--62473 25 5.6 25 74 17 104 51 0 0 48 1.00
62379--62472 6 15.8 6 71 16 63 51 0 0 48 1.00
62379--62472 39 2.4 38 81 11 111 51 0 0 48 1.00
62399--62489 46 2.0 45 85 6 121 49 1 2 47 1.21
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62804--62887 39 2.2 39 100 0 168 33 17 20 28 1.95
68033--68068 14 2.6 14 100 0 72 61 5 0 33 1.19
70464--70511 12 4.6 11 75 21 50 33 8 0 58 1.28
70464--70523 18 3.3 18 86 9 77 33 10 0 56 1.32
70486--70529 12 3.4 12 87 9 52 36 9 0 54 1.32
70966--71018 14 3.8 13 90 5 61 49 9 1 39 1.46
70960--71013 28 1.9 28 85 7 74 46 11 1 40 1.50
70978--71030 14 3.8 14 87 9 65 52 9 0 37 1.34
71073--71107 16 2.2 16 89 0 52 40 0 14 45 1.45
82591--82639 24 2.0 24 96 0 89 28 30 12 28 1.93
83829--83865 19 1.9 19 88 0 56 0 5 5 89 0.60
84982--85041 21 2.9 21 92 0 93 48 0 6 45 1.29
85011--85159 3 49.3 3 72 17 87 62 0 2 35 1.07
85013--85096 13 6.2 13 78 12 71 63 0 0 36 0.95
85011--85149 28 4.6 29 74 16 106 63 0 1 35 1.04
85032--85146 10 10.9 10 71 23 76 66 0 1 32 1.02
85035--85106 13 5.4 13 75 15 58 66 0 0 33 0.92
85048--85149 16 6.2 16 78 17 88 67 0 1 30 1.01
85133--85177 10 4.6 10 78 21 51 51 0 11 37 1.38
85141--85186 17 2.9 16 87 12 69 52 0 10 36 1.37
85194--85222 14 2.1 14 100 0 58 31 0 6 62 1.22
85693--85729 13 3.0 13 84 11 51 13 0 0 86 0.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
85686--85737 15 3.3 15 78 10 52 17 1 0 80 0.80
85697--85737 21 2.0 21 85 0 55 17 0 0 82 0.66
86287--86326 20 2.0 20 100 0 80 40 25 5 30 1.77
90491--90521 15 2.1 15 100 0 62 19 32 0 48 1.49
92763--92845 21 3.8 21 91 4 121 14 27 10 46 1.78
92784--92852 21 3.3 21 95 0 120 13 31 8 46 1.73
95202--95268 24 3.6 18 74 25 59 32 5 23 37 1.79
95209--95261 24 2.2 24 100 0 106 33 7 24 33 1.84
103554--103619 6 11.2 6 96 1 116 33 1 13 51 1.50
116986--117252 23 12.0 22 73 16 144 62 0 0 37 0.95
116988--117252 61 4.3 62 72 15 208 62 0 0 37 0.95
117210--117262 10 5.3 11 78 17 62 69 0 0 30 0.88
117266--117299 17 2.0 17 100 0 68 23 0 5 70 1.09
117272--117310 17 2.3 17 86 0 51 25 0 10 64 1.25
121906--121933 13 2.2 13 100 0 56 53 7 7 32 1.55
121919--121978 19 2.9 22 76 19 65 46 5 5 43 1.47
121938--121978 19 2.2 19 100 0 82 46 4 4 43 1.46
121977--122006 15 2.0 15 93 0 51 40 10 0 50 1.36
122061--122105 23 1.9 23 81 4 54 73 0 6 20 1.05
122113--122139 12 2.2 12 100 0 54 48 0 7 44 1.31
122097--122156 31 1.9 32 86 10 88 46 0 8 45 1.33
128505--128541 18 2.1 18 94 0 65 48 5 13 32 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131220--131246 12 2.2 12 100 0 54 14 7 0 77 0.97
143843--143908 6 11.2 6 96 1 116 51 13 1 33 1.50
152201--152253 24 2.2 24 100 0 106 33 24 7 33 1.84
152194--152257 18 3.2 19 73 26 53 35 25 6 32 1.81
154610--154678 21 3.3 21 95 0 120 46 8 31 13 1.73
154617--154699 21 3.8 21 91 4 121 46 10 27 14 1.78
156941--156971 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!