NC_079954.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_079954.1 Citrus natsudaidai plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160185
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8926--8950 12 2.1 12 100 0 50 16 24 0 60 1.36
8979--9009 16 1.9 16 93 0 53 48 9 12 29 1.73
13459--13490 15 2.1 15 100 0 64 31 6 0 62 1.20
31917--31953 17 2.2 17 100 0 74 32 10 0 56 1.34
34208--34244 18 2.1 18 100 0 74 24 10 32 32 1.90
34698--34743 22 2.1 22 100 0 92 45 0 17 36 1.49
34761--34788 14 2.0 14 100 0 56 50 7 21 21 1.72
39547--39577 10 3.1 10 95 0 53 48 0 3 48 1.17
39790--39863 24 3.1 24 100 0 148 37 12 16 33 1.85
45811--45844 16 2.1 16 94 0 59 64 5 2 26 1.30
51960--51991 16 2.0 16 93 0 55 9 3 0 87 0.64
58311--58353 21 2.0 22 95 4 79 23 18 11 46 1.82
61322--61363 18 2.3 18 100 0 84 45 11 23 19 1.83
62787--62835 25 2.0 24 92 4 80 44 8 4 42 1.53
72205--72243 21 1.9 21 89 5 62 33 25 10 30 1.89
81338--81368 16 1.9 16 100 0 62 12 9 0 77 0.99
88993--89038 23 2.0 23 100 0 92 47 17 8 26 1.76
93171--93245 21 3.2 24 70 16 68 10 24 8 57 1.59
95625--95660 18 2.0 18 100 0 72 27 11 27 33 1.91
103417--103456 12 3.2 12 85 3 53 7 5 0 87 0.66
103956--103993 18 2.1 18 95 0 67 23 7 5 63 1.42
112092--112153 32 1.9 32 96 0 115 38 24 9 27 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
117491--117534 20 2.2 20 95 0 79 56 4 4 34 1.40
118179--118221 19 2.5 16 80 20 59 48 9 13 27 1.73
118185--118222 19 2.0 19 100 0 76 42 10 15 31 1.81
123073--123112 19 2.1 19 100 0 80 50 10 15 25 1.74
135823--135884 32 1.9 32 96 0 115 27 9 24 38 1.86
143983--144020 18 2.1 18 95 0 67 63 5 7 23 1.42
144519--144560 13 3.3 12 81 18 50 88 0 4 7 0.64
152316--152351 18 2.0 18 100 0 72 33 27 11 27 1.91
158938--158983 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!