NC_079957.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_079957.1 Clematis mandshurica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159564
Tables: 1
This is table 1 of 1 ( 21 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1082--1108 11 2.5 11 100 0 54 37 0 7 55 1.28
31091--31115 12 2.1 12 100 0 50 60 8 8 24 1.52
36599--36651 25 2.2 24 96 3 97 30 7 3 58 1.43
50009--50037 14 2.0 15 93 6 51 6 6 3 82 0.93
50060--50097 17 2.2 18 85 4 51 42 15 18 23 1.89
54895--54920 12 2.2 12 100 0 52 23 15 0 61 1.33
64940--64976 17 2.2 17 100 0 74 64 5 0 29 1.15
65084--65118 13 2.7 13 95 0 61 45 2 5 45 1.41
67498--67548 13 3.8 14 75 17 54 66 0 0 33 0.92
67498--67534 14 2.7 14 84 16 51 64 0 0 35 0.94
70195--70229 18 1.9 18 88 0 52 85 2 2 8 0.79
88545--88613 21 3.2 22 78 12 72 11 23 10 55 1.66
90990--91068 18 4.6 18 93 4 128 32 6 25 35 1.81
91002--91060 9 6.6 9 78 0 64 33 6 27 32 1.83
92865--92893 12 2.4 12 100 0 58 27 20 10 41 1.85
112927--112961 18 1.9 18 94 0 61 68 14 5 11 1.37
123854--123885 15 2.1 15 94 0 55 50 0 0 50 1.00
146044--146072 12 2.4 12 100 0 58 41 10 20 27 1.85
147876--147935 9 6.7 9 76 0 66 33 26 6 33 1.83
147869--147947 18 4.6 18 93 4 128 35 25 6 32 1.81
150325--150392 21 3.2 21 81 10 77 54 10 23 11 1.67
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Tables: 1
The End!