NC_079962.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_079962.1 Rosa x centifolia voucher JTWR-32 plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156625
Tables: 1
This is table 1 of 1 ( 60 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6923--6958 15 2.6 14 87 12 56 36 0 2 61 1.11
7220--7245 13 2.0 13 100 0 52 38 15 15 30 1.88
7444--7469 13 2.0 13 100 0 52 69 0 0 30 0.89
8144--8173 15 2.0 15 100 0 60 40 6 0 53 1.27
8766--8793 13 2.2 13 100 0 56 21 0 7 71 1.09
10178--10204 13 2.1 13 100 0 54 48 0 7 44 1.31
10181--10218 20 1.9 20 88 0 58 44 0 13 42 1.43
10243--10281 18 2.2 18 100 0 78 43 0 5 51 1.24
12683--12716 17 2.0 17 100 0 68 23 11 11 52 1.70
13053--13098 12 4.0 12 88 11 78 39 0 8 52 1.33
13054--13098 22 2.0 22 100 0 90 37 0 8 53 1.32
15178--15226 13 4.0 13 79 15 68 36 0 0 63 0.95
15182--15232 23 2.2 24 96 3 95 37 0 0 62 0.95
16228--16296 23 2.8 24 86 8 79 20 21 4 53 1.62
16251--16296 23 2.0 23 100 0 92 21 21 4 52 1.64
27264--27295 16 2.0 16 93 0 55 31 12 15 40 1.85
28489--28528 20 2.0 20 95 0 71 30 10 7 52 1.62
28498--28542 19 2.3 20 84 3 56 28 13 6 51 1.66
29133--29167 16 2.2 17 90 10 56 71 5 11 11 1.30
30693--30721 14 2.1 14 100 0 58 48 20 0 31 1.50
32153--32183 16 1.9 16 93 0 53 41 0 9 48 1.36
36970--37044 18 4.1 18 76 13 64 56 1 0 42 1.08
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
36980--37043 2 34.5 2 73 14 57 56 0 0 43 0.99
36980--37033 14 3.6 14 81 18 65 57 0 0 42 0.98
36977--37043 12 6.0 12 80 18 74 56 0 0 43 0.99
44023--44058 18 2.0 18 100 0 72 38 0 5 55 1.23
52628--52668 11 3.6 12 83 12 59 39 4 0 56 1.21
56435--56460 13 2.0 13 100 0 52 38 0 15 46 1.46
58572--58636 31 2.1 31 100 0 130 30 12 9 47 1.72
60321--60357 15 2.5 15 91 4 58 24 8 0 67 1.17
66618--66652 17 2.1 17 94 0 61 37 5 8 48 1.58
66750--66798 24 2.0 24 100 0 98 28 8 8 55 1.58
66821--66868 19 2.6 19 96 3 89 25 20 10 43 1.83
67917--67956 19 2.1 19 100 0 80 27 10 0 62 1.27
69201--69239 21 1.9 21 94 5 71 33 23 10 33 1.88
75777--75812 18 2.0 18 94 0 63 36 5 13 44 1.68
90458--90525 21 3.2 21 82 0 82 11 22 7 58 1.57
92892--92928 18 2.1 18 100 0 74 32 5 27 35 1.79
100312--100338 12 2.2 12 100 0 54 7 7 0 85 0.75
100309--100342 17 2.0 17 88 11 52 8 8 0 82 0.85
100863--100906 6 8.0 6 76 19 51 34 2 15 47 1.58
100863--100910 11 4.5 11 87 7 73 33 2 16 47 1.58
100860--100903 21 2.1 21 100 0 88 31 4 13 50 1.62
109100--109161 32 1.9 32 93 0 106 38 22 11 27 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114278--114311 11 3.0 11 87 8 50 32 0 5 61 1.20
114293--114332 20 2.0 20 100 0 80 45 0 0 55 0.99
115430--115469 14 2.9 13 88 7 53 57 2 2 37 1.26
115424--115505 28 2.8 28 82 10 85 53 4 2 39 1.35
115459--115512 28 1.9 28 100 0 108 48 7 3 40 1.49
122407--122446 17 2.5 17 84 8 57 37 2 2 57 1.26
122455--122487 12 2.6 13 90 4 50 60 0 3 36 1.12
125588--125619 16 2.0 16 93 0 55 31 3 12 53 1.54
133136--133197 32 1.9 32 93 0 106 27 11 22 38 1.88
141391--141434 6 8.0 6 76 19 51 47 15 2 34 1.58
141387--141434 11 4.5 11 87 7 73 47 16 2 33 1.58
141394--141437 21 2.1 21 100 0 88 50 13 4 31 1.62
141959--141985 12 2.2 12 100 0 54 85 0 7 7 0.75
141955--141988 17 2.0 17 88 11 52 82 0 8 8 0.85
149369--149405 18 2.1 18 100 0 74 35 27 5 32 1.79
151773--151861 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!