NC_081908.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_081908.1 Ranunculus ternatus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156003
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
16229--16257 15 1.9 15 100 0 58 27 0 20 51 1.47
22510--22557 8 6.0 8 79 16 55 37 0 2 60 1.09
22509--22555 23 2.0 23 95 0 85 34 0 2 63 1.06
26728--26769 21 2.0 21 100 0 84 28 9 28 33 1.88
32016--32044 12 2.4 12 100 0 58 41 0 24 34 1.55
43254--43296 21 2.0 21 95 0 77 44 4 4 46 1.45
43260--43337 21 4.2 19 73 20 74 51 3 1 43 1.28
43262--43306 12 4.0 12 72 16 51 48 2 2 46 1.26
43262--43310 14 3.1 14 81 18 53 48 2 2 46 1.25
43259--43328 21 3.3 21 84 4 79 50 2 1 45 1.25
43300--43341 21 2.0 21 100 0 84 57 4 0 38 1.20
44580--44637 29 2.0 29 100 0 116 41 13 13 31 1.84
47479--47513 17 2.2 15 90 10 52 65 0 8 25 1.21
47487--47511 11 2.3 11 100 0 50 64 0 8 28 1.22
47625--47662 19 2.0 19 94 0 67 31 2 0 65 1.06
60469--60508 20 2.0 20 100 0 80 45 30 0 25 1.54
70655--70682 14 2.0 14 100 0 56 42 35 7 14 1.73
85082--85113 15 2.1 15 100 0 64 34 12 0 53 1.39
90172--90240 21 3.3 21 89 2 104 10 27 11 50 1.70
92618--92696 18 4.6 18 93 4 128 32 6 25 35 1.81
92630--92688 9 6.6 9 78 0 64 33 6 27 32 1.83
110775--110843 7 9.6 7 74 22 63 60 13 0 26 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110797--110843 17 2.6 18 93 6 78 59 14 0 25 1.36
118896--118927 16 2.0 16 93 0 55 59 6 12 21 1.55
130219--130263 21 2.2 21 80 7 58 28 33 8 28 1.87
130527--130563 18 2.1 18 100 0 74 27 16 10 45 1.80
130529--130573 18 2.5 18 89 7 65 31 15 11 42 1.82
148712--148771 9 6.7 9 76 0 66 33 26 6 33 1.83
148705--148783 18 4.6 18 93 4 128 35 25 6 32 1.81
151161--151229 21 3.3 21 89 2 104 50 11 27 10 1.70
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Tables: 1
The End!