NC_082574.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_082574.1 Chamaemelum nobile chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 149827
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4987--5019 15 2.3 15 89 5 50 57 9 9 24 1.58
8836--8872 18 2.1 18 100 0 74 32 5 21 40 1.76
10248--10290 18 2.2 20 88 8 63 65 0 0 34 0.93
10248--10300 23 2.4 22 93 3 88 64 0 0 35 0.94
25126--25150 12 2.1 12 100 0 50 60 8 8 24 1.52
29891--29922 13 2.4 13 94 5 55 34 6 12 46 1.67
31111--31147 18 2.1 18 100 0 74 67 0 5 27 1.12
45639--45671 16 2.1 16 100 0 66 30 12 12 45 1.78
45800--45833 17 2.0 17 100 0 68 70 0 17 11 1.16
51931--51968 18 2.1 18 95 0 67 13 5 10 71 1.30
65237--65284 23 2.1 23 100 0 96 56 4 4 35 1.38
66402--66442 21 2.0 21 95 0 73 31 24 9 34 1.88
76078--76105 14 2.0 14 100 0 56 42 7 7 42 1.59
82221--82285 21 2.9 22 80 11 78 43 0 0 56 0.99
89276--89350 18 4.4 17 88 8 73 29 8 25 37 1.84
89287--89350 9 7.1 9 74 0 65 29 7 26 35 1.85
89286--89363 18 4.3 18 96 0 138 29 10 25 34 1.89
96937--96961 10 2.5 10 100 0 50 40 8 0 52 1.31
104947--105008 32 1.9 32 96 0 115 41 20 8 29 1.81
110448--110487 21 1.9 21 100 0 80 20 2 35 42 1.65
114798--114837 20 2.0 20 100 0 80 20 5 0 75 0.99
114776--114830 28 2.0 28 89 3 85 21 7 1 69 1.23
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114837--114893 15 3.7 15 81 9 78 50 0 10 38 1.37
114833--114896 32 2.0 32 100 0 128 53 0 9 37 1.34
117612--117668 28 2.0 28 96 0 105 47 5 7 40 1.53
127337--127398 32 1.9 32 96 0 115 29 8 20 41 1.81
135384--135408 10 2.5 10 100 0 50 52 0 8 40 1.31
142982--143059 18 4.3 18 96 0 138 34 25 10 29 1.89
142982--143059 9 8.7 9 71 0 66 34 25 10 29 1.89
143031--143069 18 2.4 16 87 12 53 41 23 5 30 1.76
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Tables: 1
The End!