NC_082579.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_082579.1 Cardiospermum halicacabum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159370
Tables: 1
This is table 1 of 1 ( 49 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1906--1946 21 2.0 21 85 0 55 46 2 12 39 1.54
4868--4895 14 2.0 14 100 0 56 50 7 14 28 1.69
6819--6846 14 2.0 14 100 0 56 14 21 14 50 1.78
6857--6881 12 2.1 12 100 0 50 68 16 16 0 1.22
7386--7424 19 2.1 19 95 0 69 35 12 12 38 1.82
8600--8643 11 4.0 11 85 8 54 27 15 0 56 1.40
8601--8636 16 2.2 16 90 9 56 27 13 0 58 1.36
12823--12848 12 2.2 12 100 0 52 53 23 0 23 1.46
13435--13480 22 2.2 21 84 7 58 13 10 4 71 1.27
29871--29900 15 2.0 15 100 0 60 46 6 33 13 1.69
30361--30397 17 2.2 17 90 0 56 64 2 21 10 1.37
33000--33029 15 2.0 15 100 0 60 40 13 6 40 1.71
44454--44497 23 2.0 23 82 13 56 11 31 27 29 1.91
46463--46507 14 3.2 14 100 0 90 6 13 0 80 0.91
52455--52485 15 2.0 16 93 6 55 35 6 12 45 1.68
52450--52487 15 2.6 14 84 15 51 28 5 13 52 1.61
52869--52905 18 2.1 18 100 0 74 21 5 5 67 1.31
52929--52973 17 2.6 17 85 3 63 40 0 2 57 1.11
52958--52982 13 1.9 13 100 0 50 40 0 0 60 0.97
53946--53994 16 3.1 16 100 0 98 26 18 6 48 1.71
56453--56482 15 2.0 15 93 0 51 13 23 6 56 1.60
58827--58879 26 2.0 26 96 0 97 41 7 20 30 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
59583--59654 18 4.0 18 96 0 135 33 20 18 27 1.96
64940--64969 14 2.1 14 93 0 51 33 6 0 60 1.23
67071--67109 14 2.7 16 81 18 50 69 2 17 10 1.28
67071--67113 18 2.3 19 88 11 63 69 2 18 9 1.26
71667--71703 11 3.6 11 79 20 53 56 0 5 37 1.22
71662--71704 19 2.3 19 95 0 77 55 0 4 39 1.20
84438--84472 17 2.1 17 94 0 61 34 11 14 40 1.82
88219--88254 18 2.0 18 100 0 72 38 27 11 22 1.88
91031--91084 21 2.6 21 100 0 108 7 18 12 61 1.54
93436--93472 18 2.1 18 89 0 56 32 10 21 35 1.88
97923--97951 14 2.1 14 100 0 58 20 31 6 41 1.79
101203--101263 19 3.3 18 75 6 59 9 11 0 78 0.96
101514--101555 21 2.0 21 100 0 84 33 23 19 23 1.97
101774--101811 18 2.1 18 95 0 67 21 10 7 60 1.54
101803--101840 11 3.5 11 89 3 60 31 2 18 47 1.62
101798--101840 22 2.0 21 90 4 68 30 4 16 48 1.66
120307--120335 15 1.9 15 100 0 58 27 13 10 48 1.75
126543--126579 18 2.0 19 89 5 58 64 2 5 27 1.28
142215--142250 11 3.3 11 88 0 54 50 13 5 30 1.65
142208--142269 22 3.0 21 82 13 76 51 14 6 27 1.66
142237--142274 18 2.1 18 95 0 67 60 7 10 21 1.54
142493--142534 21 2.0 21 100 0 84 23 19 23 33 1.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
142785--142845 19 3.3 19 76 2 61 78 0 11 9 0.96
146097--146125 14 2.1 14 100 0 58 41 6 31 20 1.79
150576--150617 18 2.3 18 83 0 57 33 21 14 30 1.93
152964--153017 21 2.6 21 100 0 108 61 12 18 7 1.54
155794--155829 18 2.0 18 100 0 72 22 11 27 38 1.88
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Tables: 1
The End!