NC_083133.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_083133.1 Hypericum perforatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 139725
Tables: 1
This is table 1 of 1 ( 104 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6--38 11 3.0 11 90 0 57 36 42 0 21 1.53
31--61 15 2.1 15 100 0 62 32 38 0 29 1.57
2254--2278 12 2.1 12 100 0 50 32 24 8 36 1.84
2556--2604 23 2.1 23 100 0 98 16 20 8 55 1.66
7090--7116 12 2.2 12 100 0 54 85 0 0 14 0.61
8577--8615 19 2.1 19 100 0 78 38 10 5 46 1.60
9007--9051 23 2.0 23 100 0 90 31 20 4 44 1.71
15908--15947 21 2.0 20 90 5 62 32 5 0 62 1.17
15931--16010 10 7.7 10 75 19 58 18 8 2 70 1.25
15969--16009 21 2.0 20 95 4 73 24 9 0 65 1.22
16032--16056 13 1.9 13 100 0 50 20 8 8 64 1.46
22374--22405 16 2.0 16 100 0 64 18 12 18 50 1.78
23457--23498 21 2.0 21 100 0 84 38 4 28 28 1.77
27327--27368 21 2.0 21 95 0 75 14 21 21 42 1.88
27371--27401 13 2.4 13 100 0 62 16 22 32 29 1.95
28912--28967 28 2.0 28 100 0 112 14 35 25 25 1.93
29131--29165 17 2.1 17 100 0 70 28 0 17 54 1.43
29929--29978 25 2.0 25 96 0 91 36 12 10 42 1.76
29984--30027 15 2.8 16 80 16 56 50 0 2 47 1.13
30005--30040 13 2.7 13 91 4 54 47 0 8 44 1.33
30311--30362 25 2.1 25 88 0 77 48 9 19 23 1.78
31559--31618 29 2.1 28 87 3 84 21 8 31 38 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
35129--35185 23 2.2 26 73 23 66 33 5 17 43 1.71
35140--35186 23 2.0 23 95 0 85 38 4 14 42 1.66
47472--47528 24 2.4 24 96 0 105 31 19 15 33 1.93
47637--47669 15 2.2 15 100 0 66 33 18 6 42 1.75
53144--53206 33 1.9 33 86 0 90 47 9 12 30 1.73
54187--54713 88 6.0 88 100 0 1054 51 14 12 21 1.75
55111--55155 22 2.0 22 100 0 90 55 22 4 17 1.60
55734--55784 24 2.1 24 100 0 102 41 11 7 39 1.71
56039--56104 24 2.8 24 81 4 71 16 28 12 42 1.84
56151--56188 18 2.1 18 100 0 76 31 31 21 15 1.94
56237--56316 12 6.2 12 72 16 70 13 18 47 20 1.82
56221--56309 24 3.5 24 81 16 115 13 20 46 20 1.84
56188--56322 30 4.6 30 85 13 192 15 20 43 20 1.87
56188--56280 18 5.7 18 73 21 105 15 19 45 20 1.86
57033--57070 18 2.1 18 95 0 67 31 28 21 18 1.97
57070--57333 18 15.0 18 75 13 219 14 19 46 20 1.84
57088--57309 12 18.5 12 75 0 183 13 18 48 19 1.80
57092--57333 48 5.0 48 76 13 264 14 19 46 20 1.84
57088--57330 66 3.8 60 75 14 236 13 19 47 19 1.82
57089--57327 30 8.2 30 75 5 202 13 19 47 19 1.82
58076--58228 15 10.6 15 69 16 63 39 24 11 24 1.89
58091--58181 39 2.7 30 70 25 83 39 24 10 25 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
58533--58557 12 2.1 12 100 0 50 56 8 36 0 1.29
59887--59911 12 2.1 12 100 0 50 32 28 8 32 1.86
61024--61048 12 2.1 12 100 0 50 40 8 0 52 1.31
64079--64103 11 2.3 11 100 0 50 64 0 0 36 0.94
64098--64151 17 3.0 17 75 19 56 68 1 16 12 1.29
64106--64143 20 1.9 20 100 0 76 71 0 15 13 1.16
64294--64347 17 3.0 17 75 19 56 68 1 16 12 1.29
64302--64339 20 1.9 20 100 0 76 71 0 15 13 1.16
65193--65238 12 3.8 12 85 2 65 86 4 8 0 0.68
65446--65487 21 2.0 21 100 0 84 47 4 28 19 1.69
67350--67382 10 3.4 10 91 4 50 24 9 0 66 1.20
68295--68350 18 3.1 18 89 0 94 10 26 16 46 1.79
68677--68701 12 2.1 12 100 0 50 16 16 36 32 1.90
68664--68748 33 2.6 33 88 3 127 25 14 34 25 1.94
69195--69219 12 2.1 12 100 0 50 16 28 8 48 1.74
75288--75325 19 2.0 19 94 0 67 28 0 15 55 1.41
79619--79657 18 2.2 18 90 0 60 12 20 17 48 1.80
80432--80467 17 2.1 17 94 0 63 19 8 5 66 1.38
81132--81156 12 2.1 12 100 0 50 24 8 16 52 1.70
82187--82267 10 8.4 10 69 12 53 43 14 2 39 1.59
82197--82264 28 2.4 28 95 2 118 42 16 2 38 1.63
82288--82318 16 1.9 16 93 0 53 77 0 3 19 0.90
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
82286--82310 10 2.5 10 100 0 50 80 0 0 20 0.72
83782--83827 24 1.9 24 86 8 67 45 13 6 34 1.69
84593--84644 9 5.8 9 86 0 77 1 34 21 42 1.64
84593--84679 18 4.8 18 85 0 93 5 34 17 42 1.73
84595--84679 27 3.1 27 91 0 125 5 34 16 43 1.72
84616--84679 9 7.1 9 92 0 92 7 34 14 43 1.74
85409--85448 20 2.0 20 100 0 80 5 20 20 55 1.62
89787--89818 16 2.0 16 100 0 64 18 6 31 43 1.75
90074--90114 20 2.0 20 90 0 64 29 17 21 31 1.96
91199--91241 12 4.0 12 72 27 51 9 20 13 55 1.66
91192--91237 19 2.4 19 88 0 65 10 26 8 54 1.64
91203--91239 19 1.9 19 100 0 74 10 16 10 62 1.55
93662--93707 18 2.6 18 92 0 74 13 17 15 54 1.71
95036--95106 15 4.8 15 72 20 69 1 25 1 71 1.02
95041--95109 22 3.2 20 88 11 102 1 26 1 71 1.03
95578--95626 11 4.3 11 83 16 64 32 2 18 46 1.60
95578--95622 6 7.5 6 81 18 58 33 2 17 46 1.61
95572--95622 25 2.0 25 96 0 93 31 3 17 47 1.66
96704--96772 21 3.0 24 87 12 117 43 8 13 34 1.74
101926--101956 16 1.9 16 93 0 53 22 25 19 32 1.97
102241--102271 16 1.9 16 93 0 53 22 25 19 32 1.97
108498--108555 29 2.0 29 100 0 116 55 10 20 13 1.68
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
109643--109682 21 1.9 21 85 10 55 72 2 7 17 1.19
111942--111969 13 2.2 13 100 0 56 14 42 0 42 1.45
112594--112662 23 3.0 23 100 0 138 39 4 17 39 1.69
112855--112914 29 2.1 29 100 0 120 56 6 6 30 1.51
113898--113927 15 2.0 15 93 0 51 43 10 0 46 1.37
114396--114444 21 2.3 22 92 3 82 51 6 6 36 1.52
117171--117209 19 2.1 19 100 0 78 10 25 5 58 1.51
119720--119751 14 2.4 13 94 5 55 90 0 6 3 0.53
125153--125192 21 1.9 21 85 10 55 17 7 2 72 1.19
126280--126337 29 2.0 29 100 0 116 13 20 10 55 1.68
132564--132594 16 1.9 16 93 0 53 32 19 25 22 1.97
132879--132909 16 1.9 16 93 0 53 32 19 25 22 1.97
138063--138131 21 3.0 24 87 12 117 34 13 8 43 1.74
139213--139257 6 7.5 6 81 18 58 46 17 2 33 1.61
139209--139257 11 4.3 11 83 16 64 46 18 2 32 1.60
139213--139263 25 2.0 25 96 0 93 47 17 3 31 1.66
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Tables: 1
The End!