NC_083219.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_083219.1 Nigella sativa chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154120
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4025--4055 15 2.1 15 93 0 53 51 19 6 22 1.69
4491--4516 13 2.0 13 100 0 52 46 7 23 23 1.78
6909--6942 17 2.0 17 100 0 68 52 11 17 17 1.73
16647--16711 20 3.5 20 68 23 68 38 26 13 21 1.91
16639--16710 36 2.0 36 100 0 144 36 25 16 22 1.94
26857--26881 13 1.9 13 100 0 50 52 0 0 48 1.00
35878--35906 14 2.1 14 100 0 58 27 13 0 58 1.36
45595--45622 13 2.2 13 100 0 56 53 0 7 39 1.28
55792--55816 13 1.9 13 100 0 50 40 0 20 40 1.52
57922--57968 23 2.0 23 100 0 94 29 21 8 40 1.83
57969--58034 15 4.0 15 71 21 60 31 1 10 56 1.43
58245--58379 33 4.3 33 80 11 165 40 14 31 14 1.86
58235--58360 60 2.1 60 90 0 207 35 15 30 18 1.92
58442--58513 27 2.7 27 88 0 99 37 13 20 27 1.91
58534--58644 27 4.1 27 83 0 141 40 16 19 23 1.91
58975--59051 27 2.9 27 82 0 91 44 9 31 15 1.78
60103--60132 14 2.1 14 100 0 60 36 0 13 50 1.42
60411--60440 14 2.1 14 100 0 60 53 0 6 40 1.27
66991--67025 17 2.1 17 89 5 54 31 20 2 45 1.65
75441--75486 24 1.9 24 100 0 92 34 13 19 32 1.90
80352--80398 24 2.0 24 91 0 76 25 29 14 29 1.95
82992--83062 2 38.5 2 72 16 55 61 0 0 38 0.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
82991--83077 36 2.4 36 83 12 101 60 0 2 36 1.09
82986--83071 30 3.0 29 82 14 108 61 1 1 36 1.11
82991--83063 13 5.7 13 75 18 64 63 0 0 36 0.95
87651--87721 33 2.2 33 97 2 135 43 15 7 33 1.74
87689--87886 22 9.0 22 82 8 206 44 14 8 32 1.75
87799--87853 11 5.0 11 75 16 60 40 16 9 34 1.80
87777--87875 33 3.0 33 98 0 189 43 15 8 33 1.76
89730--89798 21 3.2 22 78 12 72 11 23 10 55 1.66
92232--92304 18 4.1 18 94 3 121 27 5 30 36 1.79
92236--92312 36 2.1 36 85 4 102 29 6 32 31 1.83
93581--93776 18 10.6 18 89 6 257 38 16 31 13 1.87
93710--93812 24 4.5 24 83 14 137 45 9 33 11 1.73
109248--109274 13 2.1 13 100 0 54 85 0 7 7 0.75
109251--109283 15 2.2 15 94 0 57 90 0 6 3 0.52
123290--123336 21 2.2 21 82 17 62 44 8 4 42 1.54
123300--123342 21 2.0 21 100 0 86 46 9 4 39 1.57
130376--130408 16 2.1 16 94 5 59 3 6 0 90 0.52
130385--130411 13 2.1 13 100 0 54 7 7 0 85 0.75
145847--145949 24 4.5 24 83 14 137 11 33 9 45 1.73
145883--146078 18 10.6 18 89 6 257 13 31 16 38 1.87
147355--147427 18 4.1 18 92 5 121 36 30 5 27 1.79
149862--149929 21 3.2 21 81 10 77 54 10 23 11 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
151773--151970 22 9.0 22 81 9 208 32 8 14 44 1.75
151784--152008 33 6.2 33 86 11 218 32 8 14 44 1.76
151806--151860 11 5.0 11 75 16 60 34 9 16 40 1.80
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Tables: 1
The End!