OM617846.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OM617846.1 Salvia officinalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151163
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6676--6727 24 2.2 24 86 10 72 42 11 9 36 1.74
13906--13933 14 2.0 14 100 0 56 42 14 21 21 1.88
27347--27381 15 2.3 15 90 0 52 40 17 14 28 1.88
28541--28579 15 2.6 15 91 0 60 43 0 23 33 1.54
35785--35814 14 2.1 14 100 0 60 73 0 20 6 1.05
41561--41619 32 2.0 31 83 12 79 67 3 0 28 1.06
41575--41619 23 2.0 23 82 8 56 68 2 0 28 1.01
47148--47197 25 2.0 25 100 0 100 28 12 0 60 1.32
47137--47199 25 3.0 20 75 22 65 25 11 0 63 1.27
58189--58231 17 2.6 16 81 3 50 51 9 2 37 1.47
87226--87280 24 2.5 22 85 8 67 14 23 12 49 1.78
87248--87315 21 3.2 21 77 8 75 11 22 10 55 1.65
89636--89712 18 4.3 18 90 6 102 33 6 25 33 1.82
89637--89712 36 2.1 36 90 0 116 34 6 25 34 1.82
97438--97472 17 2.0 18 94 5 63 28 0 22 48 1.51
105421--105481 31 2.0 31 93 0 104 40 21 9 27 1.85
109646--109684 20 2.0 20 85 10 53 56 23 0 20 1.42
124246--124293 14 3.6 14 80 5 55 0 14 6 79 0.92
124239--124281 14 3.1 14 83 3 52 0 18 2 79 0.85
124239--124293 27 2.1 26 83 10 67 0 16 5 78 0.93
128112--128172 31 2.0 31 93 0 104 27 9 21 40 1.85
136121--136155 17 2.0 18 94 5 63 48 22 0 28 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
136148--136193 23 2.0 23 86 0 65 60 6 6 26 1.46
143881--143958 18 4.3 18 91 0 120 33 25 7 33 1.84
143882--143957 9 8.4 9 70 0 53 32 26 6 34 1.82
146296--146349 21 2.6 21 82 11 74 59 11 20 9 1.59
146278--146367 21 4.1 22 75 8 67 53 11 23 12 1.70
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Tables: 1
The End!