ON065557.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: ON065557.1 UNVERIFIED: Marsdenia tenacissima chloroplast sequence Parameters: 2 7 7 80 10 50 500 Length: 164534 Tables: 1 2 This is table 1 of 2 ( 155 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 85--116 9 3.8 9 84 16 50 21 25 0 53 1.46 119--168 17 2.8 18 85 11 68 22 4 0 74 0.99 334--389 16 3.7 15 77 18 62 28 1 14 55 1.49 402--560 21 7.5 22 72 17 122 35 2 1 60 1.18 476--659 3 63.7 3 65 19 70 40 0 0 58 1.06 469--559 17 5.8 17 83 15 108 34 0 0 65 0.93 567--669 37 2.8 37 87 10 133 46 0 0 51 1.14 597--666 17 4.0 17 82 14 88 48 0 0 51 1.00 521--665 17 7.9 19 71 17 78 44 0 0 54 1.10 691--728 20 1.9 20 94 0 67 34 2 2 60 1.24 5244--5282 10 3.8 10 83 6 51 84 0 12 2 0.72 6890--7003 20 5.8 20 89 10 175 46 0 5 48 1.24 6890--7020 40 3.3 39 86 12 180 47 0 5 47 1.25 6890--7020 56 2.2 56 85 12 167 47 0 5 47 1.25 7351--7394 22 2.0 22 100 0 88 45 9 9 36 1.68 8221--8250 15 2.0 15 100 0 60 53 0 6 40 1.27 8221--8265 12 3.3 13 84 15 56 53 0 8 37 1.32 9576--9639 9 7.3 9 81 13 71 31 3 9 56 1.47 9582--9630 16 3.0 16 87 3 71 32 2 6 59 1.34 9583--9653 25 2.9 25 80 15 69 35 2 7 54 1.42 9633--9720 15 5.9 15 71 27 62 45 0 3 51 1.18 9626--9691 35 1.9 34 90 3 105 45 1 4 48 1.32 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 9645--9682 20 1.9 20 100 0 76 47 0 5 47 1.24 20666--20706 15 2.8 15 88 3 57 29 14 0 56 1.39 20700--20737 13 2.9 13 100 0 76 31 15 5 47 1.68 20734--20808 16 4.8 16 76 11 59 40 5 4 50 1.44 20721--20810 16 4.8 20 73 17 52 38 6 4 50 1.49 20749--20810 16 4.0 16 77 12 67 38 6 4 50 1.50 20803--20844 21 2.0 21 85 0 57 30 4 7 57 1.47 20904--20960 15 3.5 15 77 17 51 61 0 3 35 1.13 20904--20986 35 2.4 34 82 7 105 59 0 2 38 1.11 20925--21091 15 11.2 15 70 19 68 60 1 1 37 1.12 20941--21097 30 5.3 28 70 21 90 59 1 0 37 1.13 20881--21063 20 9.9 19 71 20 106 62 0 1 34 1.09 20884--21069 74 2.5 77 74 11 172 62 0 1 35 1.09 21017--21049 12 2.8 12 100 0 66 75 0 0 24 0.80 21046--21087 6 7.0 6 78 10 50 54 2 0 42 1.13 21148--21184 18 2.1 18 100 0 74 43 0 10 45 1.39 21193--21234 12 3.3 12 93 6 66 45 2 19 33 1.63 21197--21236 14 3.0 14 92 7 66 45 5 15 35 1.68 28416--28449 17 2.0 17 100 0 68 52 5 0 41 1.25 33578--33611 17 2.0 17 100 0 68 23 17 11 47 1.81 35450--35480 16 2.0 15 93 6 53 48 0 6 45 1.28 35834--35871 18 2.1 18 100 0 76 42 21 5 31 1.75 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 37909--37936 14 2.0 14 100 0 56 35 14 0 50 1.43 42779--42815 8 4.6 8 89 0 56 43 0 0 56 0.99 42780--42815 16 2.2 16 100 0 72 44 0 0 55 0.99 42802--42885 11 7.8 11 74 17 63 42 1 2 53 1.21 42808--42858 19 2.8 18 91 5 77 43 1 3 50 1.31 42825--42885 21 2.7 23 80 19 74 44 1 1 52 1.20 42851--42882 15 2.1 15 100 0 64 46 0 0 53 1.00 43349--43426 20 4.0 20 83 6 106 39 7 28 24 1.83 43347--43423 38 2.0 38 97 0 145 41 7 24 25 1.82 48929--49001 20 3.9 20 82 17 111 68 0 5 26 1.11 48908--49008 35 2.9 35 93 1 166 67 0 3 28 1.09 48949--49008 15 3.7 15 80 20 75 71 0 5 23 1.05 49194--49252 8 7.8 8 76 17 54 49 5 0 45 1.24 49198--49253 29 1.9 29 89 7 87 48 7 0 44 1.30 49206--49248 21 2.0 21 100 0 86 48 4 0 46 1.22 49209--49261 8 7.0 8 81 12 58 45 7 0 47 1.31 51469--51506 15 2.4 16 91 4 60 18 0 0 81 0.69 51664--51694 15 2.1 15 93 0 53 61 3 19 16 1.48 52353--52382 15 2.0 15 93 0 51 20 10 26 43 1.83 52907--52945 10 4.2 10 81 18 57 41 0 0 58 0.98 52909--52954 17 2.6 18 89 6 76 43 0 2 54 1.12 57638--57673 17 2.1 17 94 0 63 36 13 2 47 1.58 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 57843--57875 10 3.4 10 91 4 50 57 0 12 30 1.35 57871--57918 25 1.9 25 83 8 62 72 2 4 20 1.11 57999--58024 12 2.2 12 100 0 52 30 0 0 69 0.89 57963--58151 40 4.7 41 69 20 105 32 1 0 65 1.04 57959--58024 27 2.5 28 79 20 79 27 0 0 72 0.85 58009--58187 71 2.5 71 78 13 190 35 1 1 62 1.10 58218--58281 13 4.7 13 71 17 58 53 0 0 46 1.00 58203--58278 26 3.1 25 76 12 70 52 1 0 46 1.08 58253--58287 15 2.2 16 95 5 63 51 0 0 48 1.00 58227--58287 24 2.5 24 83 5 68 54 0 0 45 1.00 58832--58859 14 2.0 14 100 0 56 35 28 14 21 1.92 59110--59145 10 3.5 10 92 7 63 41 0 19 38 1.52 59912--59962 16 3.3 15 83 8 66 37 5 11 45 1.65 64845--64898 17 3.2 17 92 5 83 35 1 24 38 1.66 65673--65714 21 2.0 21 95 0 75 26 4 50 19 1.67 65736--65883 54 2.7 54 93 0 251 40 6 22 30 1.80 65863--65946 21 4.0 21 100 0 168 47 4 23 23 1.70 65738--65904 54 3.1 54 78 16 157 40 6 22 29 1.79 66956--66997 16 2.6 16 85 7 50 40 11 9 38 1.75 66969--67001 16 2.1 16 100 0 66 39 18 6 36 1.75 67044--67092 22 2.2 22 85 0 62 48 2 2 46 1.25 67055--67100 22 2.1 22 95 0 83 45 2 0 52 1.13 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 72853--72878 13 2.0 13 100 0 52 69 7 7 15 1.35 74318--74367 14 3.9 14 80 20 63 52 8 0 40 1.31 74330--74377 10 4.5 10 79 20 53 52 8 0 39 1.32 74320--74382 24 2.6 24 97 0 117 52 7 0 39 1.31 74996--75039 22 2.0 22 100 0 88 50 4 9 36 1.55 75120--75151 16 1.9 17 93 6 57 28 12 6 53 1.62 75912--75946 18 1.9 18 88 11 54 62 22 14 0 1.31 77137--77182 23 2.0 23 100 0 92 60 0 4 34 1.16 77174--77240 16 3.7 19 73 18 63 65 5 0 28 1.16 77199--77231 16 2.1 16 100 0 66 69 6 0 24 1.10 77120--77243 9 13.3 9 69 20 69 63 3 2 30 1.23 78289--78341 16 3.4 16 92 7 83 41 3 0 54 1.18 84928--84966 19 2.1 19 100 0 78 30 5 25 38 1.78 89541--89570 14 2.1 14 100 0 60 60 0 0 40 0.97 89649--89680 16 2.0 16 100 0 64 43 18 0 37 1.51 90156--90185 10 3.0 10 95 0 51 53 0 0 46 1.00 97001--97252 24 10.9 24 90 5 387 12 26 9 51 1.69 97167--97228 21 3.1 19 90 6 63 12 20 11 54 1.68 99565--99752 18 10.4 18 89 0 196 30 10 21 37 1.88 100890--100941 24 2.2 24 100 0 104 38 11 21 28 1.88 101056--101152 24 4.0 24 100 0 194 38 8 32 20 1.82 115541--115603 31 2.0 31 93 0 108 42 20 9 26 1.83 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 116887--116911 13 1.9 13 100 0 50 52 0 8 40 1.31 116952--116980 14 2.1 14 100 0 58 44 6 13 34 1.71 116874--117087 92 2.3 92 95 1 376 39 10 13 36 1.79 116979--117003 13 1.9 13 100 0 50 52 0 8 40 1.31 116843--116999 78 2.0 78 90 4 246 37 12 12 37 1.81 117044--117081 14 2.7 15 84 12 53 47 5 13 34 1.65 117230--117290 15 4.1 15 100 0 122 19 13 13 54 1.71 118437--118481 15 3.0 15 96 0 81 53 15 17 13 1.73 118480--118511 15 2.1 15 94 0 55 56 3 12 28 1.51 118517--118556 15 2.7 15 100 0 80 22 25 15 37 1.93 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2