ON881811.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: ON881811.1 UNVERIFIED: Ficus hispida chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 160307
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
183--220 10 4.0 10 83 13 53 23 0 0 76 0.79
187--220 14 2.4 14 90 0 50 23 0 0 76 0.79
6836--6884 25 2.0 25 88 8 73 55 2 0 42 1.11
10645--10683 19 2.1 19 85 0 51 41 5 0 53 1.23
29900--29955 19 3.1 18 77 10 60 32 5 3 58 1.37
30739--30782 21 2.1 21 100 0 88 45 13 4 36 1.64
31021--31062 21 2.0 21 95 0 75 50 19 11 19 1.78
31726--31758 16 2.1 16 94 0 57 27 27 12 33 1.92
33406--33491 31 3.0 29 82 11 106 44 0 2 53 1.13
33764--33821 19 2.9 19 82 5 62 44 6 8 39 1.62
38642--38689 17 2.8 17 80 3 51 56 0 2 41 1.11
38811--38860 21 2.3 21 72 3 55 76 0 4 20 0.95
38901--38950 18 2.8 18 96 3 93 56 0 4 40 1.18
38896--38959 13 5.2 13 73 19 57 54 0 3 42 1.16
45193--45233 21 2.0 21 90 9 68 60 0 0 39 0.96
47123--47154 13 2.4 14 85 15 50 75 0 0 25 0.81
49210--49249 18 2.1 19 90 9 64 70 0 5 25 1.08
49203--49256 24 2.2 26 83 12 69 68 1 5 24 1.21
49335--49367 13 2.7 12 90 9 57 48 0 0 51 1.00
49874--49899 12 2.2 12 100 0 52 50 0 0 50 1.00
62365--62402 12 3.4 12 86 13 55 44 0 5 50 1.24
62627--62654 14 2.0 14 100 0 56 42 7 0 50 1.30
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
62801--62842 17 2.4 18 76 11 52 28 14 4 52 1.62
69723--69759 16 2.4 16 95 4 67 56 0 5 37 1.22
72153--72191 21 1.9 21 89 5 62 30 23 10 35 1.88
74555--74594 19 2.1 19 100 0 80 35 25 0 40 1.56
93392--93466 21 3.2 24 73 19 77 10 24 8 57 1.59
95819--95856 18 2.1 18 100 0 76 34 5 26 34 1.79
103214--103242 14 2.1 14 100 0 58 34 6 13 44 1.71
117368--117410 21 2.0 21 86 8 61 32 2 2 62 1.20
118292--118335 22 1.9 24 90 9 74 54 6 0 38 1.27
123420--123461 19 2.2 19 91 0 66 30 23 2 42 1.67
145507--145535 14 2.1 14 100 0 58 44 13 6 34 1.71
152893--152930 18 2.1 18 100 0 76 34 26 5 34 1.79
155283--155357 21 3.2 24 73 19 77 57 8 24 10 1.59
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Tables: 1
The End!