OP581186.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OP581186.1 UNVERIFIED: Abutilon indicum chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 160445
Tables: 1
This is table 1 of 1 ( 81 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
514--551 20 1.9 20 88 0 58 44 7 10 36 1.68
5182--5212 13 2.4 13 94 0 53 74 3 6 16 1.16
5259--5310 22 2.3 23 80 12 63 17 3 5 73 1.19
5295--5323 14 2.1 14 100 0 58 13 0 6 79 0.93
5266--5308 10 4.1 10 77 11 50 16 4 6 72 1.24
8198--8230 9 3.8 9 92 4 50 39 0 27 33 1.57
8755--8794 21 1.9 21 84 0 53 27 15 0 57 1.38
9273--9310 21 1.9 19 85 15 51 47 18 13 21 1.82
10591--10621 12 2.6 12 100 0 62 51 0 6 41 1.27
18919--18966 24 2.0 23 95 0 69 43 22 12 20 1.86
31733--31760 14 2.0 14 100 0 56 50 14 14 21 1.78
32494--32544 22 2.4 21 87 9 77 56 0 3 39 1.18
32504--32544 13 3.5 13 75 25 54 58 0 4 36 1.20
32503--32545 22 2.0 22 100 0 86 60 0 4 34 1.17
33774--33804 13 2.4 13 100 0 62 54 12 16 16 1.71
37817--37955 13 10.3 13 71 20 56 64 0 4 31 1.13
37833--37954 19 6.5 19 94 5 214 63 0 4 31 1.16
37833--37975 57 2.5 57 87 8 188 64 0 5 30 1.16
44117--44145 14 2.1 14 100 0 58 34 6 0 58 1.25
44471--44511 17 2.5 17 96 4 75 56 0 12 31 1.36
47958--48107 74 2.0 74 100 0 300 44 8 12 35 1.71
48101--48154 9 5.8 9 81 14 65 64 0 0 35 0.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48122--48266 13 11.9 13 71 15 62 58 1 1 38 1.15
48113--48262 47 3.3 45 72 14 125 59 1 1 38 1.14
48191--48261 19 3.2 21 82 15 83 61 0 2 35 1.10
48199--48276 27 3.0 26 80 10 86 62 0 1 35 1.03
48115--48266 7 22.7 7 64 20 58 59 1 1 38 1.14
48822--48891 18 3.8 19 76 14 67 50 0 0 50 1.00
48916--48978 22 3.0 22 81 9 60 26 4 3 65 1.28
48950--48998 24 2.0 25 84 11 66 28 6 4 61 1.38
49118--49157 12 3.3 12 100 0 80 50 0 7 42 1.30
49870--49914 18 2.5 18 100 0 90 73 4 13 8 1.23
51175--51212 20 2.0 20 89 5 60 13 7 2 76 1.11
54003--54030 14 2.0 14 100 0 56 64 0 7 28 1.20
54046--54070 10 2.5 10 100 0 50 40 0 0 60 0.97
54693--54729 15 2.4 15 95 4 65 67 0 5 27 1.12
55402--55432 15 2.1 15 100 0 62 19 6 25 48 1.72
55775--55816 19 2.1 21 86 8 61 14 19 7 59 1.57
58422--58447 13 2.0 13 100 0 52 53 0 7 38 1.30
58435--58506 33 2.1 35 80 14 80 37 1 1 59 1.15
58489--58525 19 1.9 19 89 10 58 27 0 0 72 0.84
58452--58546 18 5.3 18 70 18 65 30 3 0 66 1.07
62924--62951 13 2.2 13 100 0 56 57 7 7 28 1.52
64887--64931 15 3.0 15 96 0 81 46 2 11 40 1.52
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
67701--67779 9 7.8 10 75 15 56 58 1 12 27 1.43
71294--71318 13 1.9 13 100 0 50 8 0 8 84 0.79
71311--71353 21 2.0 21 95 0 77 34 2 4 58 1.32
71588--71629 15 3.0 14 82 6 50 35 9 4 50 1.56
72053--72116 18 3.3 18 80 8 56 34 3 0 62 1.11
72142--72184 21 2.0 21 100 0 86 60 0 4 34 1.17
72149--72202 21 2.6 21 85 8 67 70 1 3 24 1.13
72143--72196 21 2.8 20 88 8 67 66 1 3 27 1.19
72170--72207 20 1.9 21 84 10 53 73 7 2 15 1.17
72320--72358 21 1.9 21 94 5 71 30 25 10 33 1.89
86807--86870 11 6.1 11 81 15 82 53 0 0 46 1.00
86808--86845 19 2.0 19 100 0 76 47 0 0 52 1.00
86809--86850 19 2.3 19 91 4 68 52 0 0 47 1.00
93928--93996 21 3.3 21 87 2 95 11 24 8 55 1.64
96362--96451 18 5.2 18 90 4 132 30 8 25 35 1.86
96374--96450 9 8.6 9 72 0 55 29 10 27 32 1.90
99425--99474 20 2.5 20 84 15 75 46 4 4 46 1.40
104695--104763 18 4.1 18 76 14 74 23 8 5 62 1.46
104712--104739 14 2.0 14 100 0 56 14 14 0 71 1.15
104687--104757 32 2.2 33 85 5 92 19 11 4 64 1.42
112945--113006 32 1.9 32 96 0 115 38 22 9 29 1.86
113728--113775 21 2.2 21 96 3 87 25 4 4 66 1.27
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114757--114800 19 2.4 18 85 10 63 70 2 0 27 0.99
114695--114795 24 4.2 23 67 22 57 62 4 0 32 1.17
119131--119183 20 2.6 21 76 8 56 67 1 5 24 1.22
135759--135806 21 2.2 21 96 3 87 66 4 4 25 1.27
136528--136589 32 1.9 32 96 0 115 29 9 22 38 1.86
144795--144822 14 2.0 14 100 0 56 71 0 14 14 1.15
144777--144847 32 2.2 33 85 5 92 64 4 11 19 1.42
144771--144839 18 4.1 18 76 14 74 62 5 8 23 1.46
150060--150111 20 2.5 22 84 15 83 46 3 3 46 1.39
153083--153160 18 4.3 18 93 0 129 33 26 10 29 1.89
153083--153172 36 2.6 36 87 5 132 35 25 8 30 1.86
153083--153159 9 8.6 9 72 0 55 33 27 9 29 1.88
153083--153172 18 5.2 17 90 4 103 35 25 8 30 1.86
155538--155626 21 4.1 21 84 5 90 53 10 23 12 1.68
155538--155606 21 3.3 21 87 2 95 55 8 24 11 1.64
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Tables: 1
The End!