OQ817599.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OQ817599.1 UNVERIFIED: Aristolochia fangchi chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 159867
Tables: 1
This is table 1 of 1 ( 59 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4142--4322 14 13.4 14 69 19 100 62 0 2 34 1.09
4188--4319 41 3.3 41 81 11 159 63 0 3 33 1.10
4259--4333 27 2.8 27 80 13 77 58 0 2 38 1.12
4139--4335 16 11.7 19 67 22 63 62 0 2 35 1.09
6158--6211 12 4.9 12 78 21 73 35 7 7 50 1.59
6176--6213 14 2.8 13 84 15 51 36 5 7 50 1.54
6163--6200 19 2.0 19 100 0 76 36 5 10 47 1.61
6158--6217 31 2.0 30 96 3 111 36 6 6 50 1.55
8221--8274 27 2.0 27 100 0 108 29 7 22 40 1.81
9691--9734 9 4.8 9 85 2 52 47 2 0 50 1.13
14195--14264 9 7.9 9 80 12 74 58 0 0 41 0.98
14195--14297 37 2.7 38 82 15 117 59 0 0 39 1.04
14197--14294 5 21.0 5 74 22 56 60 0 1 38 1.04
14195--14294 41 2.5 40 82 14 109 60 0 1 39 1.04
16901--16928 14 2.0 14 100 0 56 42 28 0 28 1.56
27627--27671 19 2.4 19 92 3 74 42 6 24 26 1.79
28578--28615 19 2.0 19 100 0 76 42 21 10 26 1.85
37769--37836 18 3.7 17 81 16 66 38 2 0 58 1.13
46818--46937 6 19.7 6 71 25 60 60 0 2 36 1.10
46818--46964 33 4.3 33 76 15 131 59 0 2 37 1.12
46895--46963 2 38.5 2 74 21 64 55 0 1 43 1.08
47582--47606 11 2.3 11 100 0 50 40 0 0 60 0.97
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47598--47656 21 3.0 21 83 11 81 38 11 20 28 1.88
47623--47656 17 2.0 17 94 0 59 41 14 23 20 1.89
49573--49608 4 9.0 4 87 0 54 25 5 0 69 1.10
49572--49608 16 2.3 16 100 0 74 24 8 0 67 1.17
49654--49705 2 29.0 2 78 21 62 46 0 0 53 1.00
49651--49698 9 5.0 9 85 14 69 43 0 0 56 0.99
49648--49705 21 2.7 21 94 5 98 44 0 0 55 0.99
49655--49740 9 9.4 9 72 18 54 50 3 0 46 1.18
51753--51801 22 2.1 24 88 7 75 22 4 4 69 1.23
54632--54671 20 2.0 20 100 0 80 35 25 0 40 1.56
63511--63551 9 4.8 9 80 19 52 46 7 0 46 1.30
64791--64825 17 2.1 17 100 0 70 48 11 11 28 1.74
70089--70116 14 2.0 14 100 0 56 35 0 35 28 1.58
71452--71489 16 2.3 16 95 4 67 42 0 7 50 1.31
72404--72495 15 5.6 16 80 15 107 57 0 0 42 0.98
72408--72496 36 2.4 38 92 7 164 57 0 0 42 0.98
72373--72488 6 20.3 6 68 21 54 62 0 0 36 1.01
72374--72507 23 5.7 23 71 20 91 61 0 0 38 1.02
72672--72715 21 2.1 21 91 0 70 29 27 13 29 1.94
73856--73882 11 2.5 11 100 0 54 74 0 7 18 1.05
76417--76442 12 2.2 12 100 0 52 34 15 0 50 1.45
84230--84278 24 2.0 24 92 0 80 28 32 14 24 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
89928--89970 21 2.0 21 95 0 77 27 18 16 37 1.92
94027--94115 21 4.1 21 88 5 117 13 25 10 50 1.73
96478--96544 24 3.6 18 74 25 59 32 5 23 37 1.79
96485--96537 24 2.2 24 100 0 106 33 7 24 33 1.84
98570--98611 21 2.0 21 100 0 84 38 23 0 38 1.55
104326--104355 12 2.5 12 100 0 60 26 10 0 63 1.26
118525--118549 1 25.0 1 100 0 50 0 0 0 100 0.00
129617--129682 30 2.2 30 86 5 89 16 18 19 45 1.86
133721--133755 18 1.9 18 94 0 61 31 11 11 45 1.76
144694--144723 12 2.5 12 100 0 60 63 0 10 26 1.26
150438--150479 21 2.0 21 100 0 84 38 0 23 38 1.55
152512--152564 24 2.2 24 100 0 106 33 24 7 33 1.84
152505--152568 18 3.2 19 73 26 53 35 25 6 32 1.81
154934--155022 21 4.1 21 88 5 117 50 10 25 13 1.73
159079--159121 21 2.0 21 95 0 77 37 16 18 27 1.92
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Tables: 1
The End!