OR528897.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: OR528897.1 Astragalus membranaceus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 123548
Tables: 1
This is table 1 of 1 ( 37 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4425--4450 13 2.0 13 100 0 52 61 7 0 30 1.24
4431--4468 20 1.9 19 85 15 51 65 2 0 31 1.06
4452--4512 19 2.9 19 73 17 59 54 0 1 44 1.10
4452--4512 22 2.8 21 75 20 63 54 0 1 44 1.10
14946--14970 12 2.1 12 100 0 50 60 0 8 32 1.26
18740--18816 15 5.3 15 80 9 70 54 0 0 45 0.99
19305--19347 21 2.0 21 95 0 77 41 9 30 18 1.82
24919--24948 15 2.1 14 93 6 51 56 0 6 36 1.26
29203--29229 13 2.1 13 100 0 54 62 0 7 29 1.22
29207--29259 16 3.1 17 82 15 56 58 0 5 35 1.22
29673--29713 14 3.0 14 76 16 50 58 2 2 36 1.24
47835--47878 14 3.3 13 82 14 54 75 4 0 20 0.98
53527--53608 11 7.7 11 73 20 52 37 1 2 58 1.19
53562--53608 5 9.4 5 78 17 53 40 0 2 57 1.11
53564--53608 9 5.3 9 82 12 60 40 0 2 57 1.11
54243--54281 11 3.5 11 89 0 51 28 0 0 71 0.86
56641--56688 17 2.8 18 81 15 57 47 0 2 50 1.12
63827--63871 15 3.1 15 83 3 65 60 4 6 28 1.42
65135--65238 9 11.2 9 83 6 127 40 0 0 57 1.11
65140--65236 14 7.1 14 81 15 69 40 1 1 57 1.12
65135--65227 18 5.1 18 96 3 161 39 0 0 60 0.97
65333--65371 21 1.9 21 89 5 62 33 20 7 38 1.81
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
83060--83091 10 3.3 10 95 4 57 53 0 0 46 1.00
83100--83154 10 5.8 10 74 20 55 45 0 0 54 0.99
83060--83169 49 2.2 49 80 6 125 50 0 1 48 1.11
83251--83290 16 2.4 16 87 8 53 57 2 0 40 1.12
83281--83341 19 3.2 19 63 9 52 47 3 9 39 1.53
89408--89433 13 2.0 13 100 0 52 15 15 30 38 1.88
97317--97351 11 3.2 11 87 0 52 42 8 25 22 1.82
104000--104423 15 28.1 15 70 19 269 56 13 0 29 1.37
103962--104283 51 6.3 51 75 15 290 56 12 0 31 1.36
104082--104423 136 2.5 135 95 4 598 56 13 0 29 1.37
104038--104423 70 5.6 70 90 9 620 56 13 0 30 1.37
104447--104471 12 2.1 12 100 0 50 68 16 0 16 1.22
104338--104498 48 3.1 50 87 11 213 55 13 0 31 1.38
120270--120301 16 2.0 16 100 0 64 50 0 0 50 1.00
120322--120355 18 1.9 18 94 5 61 38 8 0 52 1.33
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Tables: 1
The End!