1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps7, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf2, ycf4 Other genes chlB, chlL, chlN, psaM Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome None Small subunit of ribosome None DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf15 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [12855:12999](-) [11807:12216](-) clpP (1/3) [88167:89105](-) ndhA (2/2) [50153:50710](-) [48859:49407](-) ndhB (2/2) [67964:68686](+) [69397:70152](+) petB (2/2) [101871:101876](+) [102609:103250](+) petD (2/2) [103425:103432](+) [104102:104591](+) rpl16 (2/2) [109394:109402](-) [108142:108552](-) rpl2 (2/2) [112295:112694](-) [111216:111646](-) rpoC1 (2/2) [22065:22505](-) [19677:21341](-) rps12 (3/3) [89929:90042](+) [66414:66645](+) [67171:67196](+) rps16 (2/2) [4918:4957](-) [4534:4613](-) ycf3 (3/3) [40811:40936](-) [39848:40075](-) [39005:39160](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rps12 GTG chlB GTG rps11 GTG infA GTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 120 genes (118 unique genes). Including: 83 protein-coding genes (83 are unique) 33 tRNA genes (31 are unique) 4 rRNA genes (4 are unique) Details are as follows: 83 protein-coding genes (83 are unique) Genes Length Location accD 2346 [113645:115990](-) atpA 1524 [10149:11672](-) atpB 1476 [118477:119952](-) atpE 414 [118054:118467](-) atpF 555 [12855:12999](-) [11807:12216](-) atpH 246 [13308:13553](-) atpI 747 [14173:14919](-) ccsA 936 [86853:87788](-) cemA 786 [96732:97517](-) chlB 1542 [5064:6605](-) chlL 876 [125175:126050](-) chlN 1365 [123789:125153](-) clpP 939 [88167:89105](-) infA 258 [106616:106873](-) matK 1524 [1603:3126](-) ndhA 1107 [50153:50710](-) [48859:49407](-) ndhB 1479 [67964:68686](+) [69397:70152](+) ndhC 363 [121686:122048](+) ndhD 1497 [44684:46180](-) ndhE 303 [46907:47209](-) ndhF 2220 [53680:55899](+) ndhG 546 [47357:47902](-) ndhH 1182 [50712:51893](-) ndhI 492 [48241:48732](-) ndhJ 522 [122876:123397](+) ndhK 801 [122018:122818](+) petA 966 [95626:96591](-) petB 648 [101871:101876](+) [102609:103250](+) petD 498 [103425:103432](+) [104102:104591](+) petG 114 [93232:93345](-) petL 96 [93452:93547](-) petN 90 [26733:26822](+) psaA 2250 [36198:38447](-) psaB 2205 [33972:36176](-) psaC 246 [46321:46566](-) psaI 111 [98960:99070](-) psaJ 129 [92422:92550](-) psaM 102 [8361:8462](-) psbA 1062 [1:1062](-) psbB 1527 [99430:100956](+) psbC 1422 [30741:32162](+) psbD 1062 [29732:30793](+) psbE 258 [94019:94276](+) psbF 120 [94286:94405](+) psbH 228 [101494:101721](+) psbI 111 [7927:8037](+) psbJ 123 [94681:94803](+) psbK 186 [7138:7323](+) psbL 117 [94438:94554](+) psbM 111 [27251:27361](-) psbN 132 [101285:101416](-) psbT 108 [101099:101206](+) psbZ 189 [32693:32881](+) rbcL 1428 [116368:117795](-) rpl14 369 [107683:108051](-) rpl16 420 [109394:109402](-) [108142:108552](-) rpl2 831 [112295:112694](-) [111216:111646](-) rpl20 336 [90824:91159](+) rpl22 426 [110335:110760](-) rpl23 291 [112716:113006](-) rpl32 273 [52685:52957](-) rpl33 201 [91916:92116](-) rpl36 114 [106466:106579](-) rpoA 984 [104826:105809](-) rpoB 3306 [22532:25837](-) rpoC1 2106 [22065:22505](-) [19677:21341](-) rpoC2 3510 [16024:19533](-) rps11 399 [105866:106264](-) rps12 372 [89929:90042](+) [66414:66645](+) [67171:67196](+) rps14 303 [33546:33848](-) rps15 261 [51999:52259](-) rps16 120 [4918:4957](-) [4534:4613](-) rps18 408 [91352:91759](-) rps19 294 [110863:111156](-) rps2 696 [15169:15864](-) rps3 696 [109495:110190](-) rps4 624 [41908:42531](-) rps7 468 [67245:67712](+) rps8 399 [107185:107583](-) ycf1 7332 [79490:86821](+) ycf2 7299 [71002:78300](+) ycf3 510 [40811:40936](-) [39848:40075](-) [39005:39160](-) ycf4 555 [97914:98468](-) 33 tRNA genes (31 are unique) Genes Location trnK-UUU [3845:3881](-) [1369:1403](-) trnQ-UUG [6747:6819](-) trnS-GCU [8113:8200](-) trnG-UCC [9035:9057](+) [9814:9861](+) trnR-UCU [10024:10095](+) trnC-GCA [26328:26398](+) trnD-GUC [28123:28196](-) trnY-GUA [28414:28497](-) trnE-UUC [28565:28637](-) trnT-GGU [28815:28886](+) trnS-UGA [32360:32445](-) trnG-GCC [33145:33215](+) trnfM-CAU [33324:33397](-) trnS-GGA [41609:41695](+) trnT-UGU [42856:42928](-) trnQ-UUG_copy2 [43116:43188](+) trnL-UAA [43409:43443](+) [43922:43971](+) trnF-GAA [44322:44394](+) trnN-GUU [56650:56721](-) trnR-ACG [56915:56988](-) trnA-UGC [61600:61637](-) [60787:60821](-) trnI-GAU [62602:62638](-) [61689:61723](-) trnV-GAC [65588:65659](-) trnI-CAU [70531:70603](-) trnL-CAA [78539:78619](-) trnL-UAG [87984:88063](-) trnP-GGG [88173:88246](+) trnP-UGG [92817:92890](+) trnW-CCA [93039:93112](+) trnM-CAU [120212:120284](-) trnV-UAC [120429:120467](+) [120993:121027](+) trnH-GUG [126588:126662](-) trnI-CAU_copy2 [126895:126967](+) 4 rRNA genes (4 are unique) Genes Location rrn5 [57090:57210](-) rrn4.5 [57572:57669](-) rrn23 [57670:60643](-) rrn16 [63440:64951](-) This genome has 17 genes with intron(s). Details are as follows: 15 gene(s) have 1 intron(s) Genes Exons rps16 [4918:4957](-) [4534:4613](-) atpF [12855:12999](-) [11807:12216](-) rpoC1 [22065:22505](-) [19677:21341](-) ndhA [50153:50710](-) [48859:49407](-) ndhB [67964:68686](+) [69397:70152](+) petB [101871:101876](+) [102609:103250](+) petD [103425:103432](+) [104102:104591](+) rpl16 [109394:109402](-) [108142:108552](-) rpl2 [112295:112694](-) [111216:111646](-) trnK-UUU [3845:3881](-) [1369:1403](-) trnG-UCC [9035:9057](+) [9814:9861](+) trnL-UAA [43409:43443](+) [43922:43971](+) trnA-UGC [61600:61637](-) [60787:60821](-) trnI-GAU [62602:62638](-) [61689:61723](-) trnV-UAC [120429:120467](+) [120993:121027](+) 2 gene(s) have 2 intron(s) Genes Exons rps12 [89929:90042](+) [66414:66645](+) [67171:67196](+) ycf3 [40811:40936](-) [39848:40075](-) [39005:39160](-)