1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase ATPA, ATPB, ATPE, ATPF, ATPH, ATPI Subunits of NADH-dehydrogenase ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, ndhA, ndhB, ndhB_copy2, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, petA, petB, petD, petG, petL, petN Subunits of photosystem I ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl23_copy2, rpl2_copy2, rpl33, rpl36 Small subunit of ribosome ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, rps11, rps12, rps12_copy2, rps14, rps15, rps18, rps19, rps19_copy2, rps2, rps3, rps4, rps7, rps7_copy2, rps8 DNA dependent RNA polymerase ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, rbcL c-type cytochrom synthesis gene ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, ccsA Envelop membrane protein ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, cemA Maturase ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, matK Protease ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, clpP Subunit of Acetyl-CoA-carboxylase ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, accD Translational initiation factor ATPA, ATPB, ATPE, ATPF, ATPH, ATPI Conserved open reading frames ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, ycf1, ycf15, ycf15_copy2, ycf1_copy2, ycf2, ycf2_copy2, ycf4 Other genes ATPA, ATPB, ATPE, ATPF, ATPH, ATPI, ndh3 Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase ndhC Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome rpl32 Small subunit of ribosome rps16 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor infA Conserved open reading frames None Other genes None 2. Multicopy genes with different lengths: Genes Length Location ycf1 1398 [116252:117650](+) ycf1_copy2 5718 [130379:136097](-) 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 clpP (3/3) [78353:78423](-) [77253:77543](-) [76346:76574](-) ndhA (2/2) [127839:128391](-) [126149:126687](-) ndhB (2/2) [103107:103829](-) [101673:102428](-) ndhB_copy2 (2/2) [148521:149243](+) [149922:150677](+) petB (1/2) [82329:82817](+) petD (1/2) [83770:84315](+) rpl16 (1/2) [87873:88232](-) rpl2 (2/2) [92414:92809](-) [91322:91789](-) rpl2_copy2 (2/2) [159541:159936](+) [160561:161028](+) rpoC1 (2/2) [25356:25793](-) [22965:24581](-) rps12 (3/3) [76045:76158](-) [105285:105516](-) [104723:104748](-) rps12_copy2 (3/3) [76045:76158](-) [146834:147065](+) [147602:147627](+) ycf3 (3/3) [48700:48823](-) [47729:47958](-) [46899:47051](-) ### The exon column shows the number of (actual exons/expected exons). ### Uncommon intron-contained genes: ATPF 2 [14870:15014](-) [13730:14199](-)] 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rps19 GTG cemA TTG rps19_copy2 GTG ndhD TTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 86 genes (77 unique genes). Including: 86 protein-coding genes (77 are unique) 0 tRNA genes (0 are unique) 0 rRNA genes (0 are unique) Details are as follows: Nonstandard gene annotation ('/gene' tags possibly be missing in your GenBank file) tRNA-His [667:742](-) tRNA-Lys join{[5149:5186](-), [2548:2577](-)} tRNA-Gln [8259:8331](-) tRNA-Ser [49275:49362](+) tRNA-Arg [137119:137193](-) tRNA-Cys [30314:30395](+) tRNA-Asp [33397:33471](-) tRNA-Tyr [33848:33932](-) tRNA-Glu [34009:34082](-) tRNA-Thr [50634:50707](-) tRNA-Gly [40416:40487](+) tRNA-Met [56466:56538](+) tRNA-Leu [150941:151022](+) tRNA-Phe [52249:52322](+) tRNA-Val [144899:144971](-) tRNA-Trp [72246:72319](-) tRNA-Pro [72527:72601](-) tRNA-Ile [159001:159075](+) 16S ribosomal RNA [143178:144669](-) tRNA-Ala join{[141757:141795](-), [140952:140987](-)} 23S ribosomal RNA [137984:140800](-) 4.5S ribosomal RNA [137783:137886](-) 5S ribosomal RNA [137437:137558](-) tRNA-Asn [136440:136512](+) 86 protein-coding genes (77 are unique) Genes Length Location ATPA 1524 [12158:13681](-) ATPB 1497 [57183:58679](-) ATPE 402 [56785:57186](-) ATPF 615 [14870:15014](-) [13730:14199](-) ATPH 246 [15426:15671](-) ATPI 744 [16630:17373](-) accD 1500 [61637:63136](+) ccsA 969 [120754:121722](+) cemA 486 [66458:66943](+) clpP 591 [78353:78423](-) [77253:77543](-) [76346:76574](-) matK 1512 [2879:4390](-) ndh3 363 [54019:54381](-) ndhA 1092 [127839:128391](-) [126149:126687](-) ndhB 1479 [103107:103829](-) [101673:102428](-) ndhB_copy2 1479 [148521:149243](+) [149922:150677](+) ndhD 1467 [121897:123363](-) ndhE 306 [124039:124344](-) ndhF 2229 [117723:119951](-) ndhG 531 [124576:125106](-) ndhH 1182 [128393:129574](-) ndhI 585 [125539:126123](-) ndhJ 477 [52691:53167](-) ndhK 678 [53284:53961](-) petA 963 [67293:68255](+) petB 489 [82329:82817](+) petD 546 [83770:84315](+) petG 114 [71986:72099](+) petL 96 [71701:71796](+) petN 90 [30748:30837](+) psaA 2253 [43558:45810](-) psaB 2205 [41328:43532](-) psaC 246 [123539:123784](-) psaI 114 [64508:64621](+) psaJ 135 [72999:73133](+) psbA 1062 [1202:2263](-) psbB 1527 [78946:80472](+) psbC 1422 [37278:38699](+) psbD 1062 [36269:37330](+) psbE 252 [69622:69873](-) psbF 120 [69489:69608](-) psbH 222 [81058:81279](+) psbI 111 [9273:9383](+) psbJ 123 [69072:69194](-) psbK 186 [8706:8891](+) psbL 117 [69346:69462](-) psbM 105 [31979:32083](-) psbN 132 [80817:80948](-) psbT 108 [80657:80764](+) psbZ 189 [39370:39558](+) rbcL 1428 [59479:60906](+) rpl14 369 [87366:87734](-) rpl16 360 [87873:88232](-) rpl2 864 [92414:92809](-) [91322:91789](-) rpl20 357 [74873:75229](-) rpl22 366 [90569:90934](-) rpl23 282 [92828:93109](-) rpl23_copy2 282 [159241:159522](+) rpl2_copy2 864 [159541:159936](+) [160561:161028](+) rpl33 201 [73608:73808](+) rpl36 114 [86087:86200](-) rpoA 1020 [84468:85487](-) rpoB 3213 [25820:29032](-) rpoC1 2055 [25356:25793](-) [22965:24581](-) rpoC2 4197 [18624:22820](-) rps11 417 [85554:85970](-) rps12 372 [76045:76158](-) [105285:105516](-) [104723:104748](-) rps12_copy2 372 [76045:76158](-) [146834:147065](+) [147602:147627](+) rps14 303 [40907:41209](-) rps15 273 [129678:129950](-) rps18 285 [74275:74559](+) rps19 279 [51:329](+) rps19_copy2 279 [90987:91265](-) rps2 711 [17628:18338](-) rps3 657 [89766:90422](-) rps4 606 [49641:50246](-) rps7 468 [104197:104664](-) rps7_copy2 468 [147686:148153](+) rps8 405 [86694:87098](-) ycf1 1398 [116253:117650](+) ycf15 138 [100469:100606](+) ycf15_copy2 138 [151744:151881](-) ycf1_copy2 5718 [130380:136097](-) ycf2 6903 [93437:100339](+) ycf2_copy2 6903 [152011:158913](-) ycf3 507 [48700:48823](-) [47729:47958](-) [46899:47051](-) ycf4 555 [64932:65486](+) 0 tRNA genes (0 are unique) Genes Location 0 rRNA genes (0 are unique) Genes Location This genome has 11 genes with intron(s). Details are as follows: 7 gene(s) have 1 intron(s) Genes Exons ATPF [14870:15014](-) [13730:14199](-) rpoC1 [25356:25793](-) [22965:24581](-) rpl2 [92414:92809](-) [91322:91789](-) ndhB [103107:103829](-) [101673:102428](-) ndhA [127839:128391](-) [126149:126687](-) ndhB_copy2 [148521:149243](+) [149922:150677](+) rpl2_copy2 [159541:159936](+) [160561:161028](+) 4 gene(s) have 2 intron(s) Genes Exons rps12 [76045:76158](-) [105285:105516](-) [104723:104748](-) ycf3 [48700:48823](-) [47729:47958](-) [46899:47051](-) rps12_copy2 [76045:76158](-) [146834:147065](+) [147602:147627](+) clpP [78353:78423](-) [77253:77543](-) [76346:76574](-)