1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE Subunits of NADH-dehydrogenase ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petG, petL Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps15, rps16, rps18, rps19, rps2, rps3, rps4, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase None Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf12, ycf2, ycf4 Other genes chlB, chlL, chlN, psaM, rpl21 Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpF, atpH, atpI Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex petB, petD, petN Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome None Small subunit of ribosome rps7 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase matK Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf1, ycf15 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 clpP (3/3) [86101:86169](-) [85106:85396](-) [84318:84572](-) ndhA (2/2) [122809:123366](-) [121384:121935](-) ndhB (2/2) [2201:2923](+) [3644:4405](+) rpl16 (2/2) [96747:96755](-) [95566:95994](-) rpl2 (2/2) [99416:99814](-) [98301:98735](-) rpoC1 (2/2) [38953:39384](-) [36686:38311](-) rps12 (3/3) [83841:83954](-) [544:775](+) [1304:1329](+) rps16 (2/2) [20988:21029](-) [20005:20217](-) ycf3 (3/3) [60586:60711](-) [59676:59903](-) [58858:59046](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rps18 ATT chlL GTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 120 genes (108 unique genes). Including: 76 protein-coding genes (76 are unique) 36 tRNA genes (28 are unique) 8 rRNA genes (4 are unique) Details are as follows: 76 protein-coding genes (76 are unique) Genes Length Location accD 933 [72283:73215](+) atpA 1524 [26473:27996](-) atpB 1482 [68189:69670](-) atpE 399 [67785:68183](-) ccsA 966 [116033:116998](+) cemA 1521 [74896:76416](+) chlB 1542 [21176:22717](-) chlL 870 [131943:132812](-) chlN 1401 [130493:131893](-) clpP 615 [86101:86169](-) [85106:85396](-) [84318:84572](-) infA 264 [93850:94113](-) ndhA 1110 [122809:123366](-) [121384:121935](-) ndhB 1485 [2201:2923](+) [3644:4405](+) ndhC 363 [65915:66277](-) ndhD 1500 [117276:118775](-) ndhE 303 [119492:119794](-) ndhF 2220 [110612:112831](-) ndhG 597 [119861:120457](-) ndhH 1182 [123367:124548](-) ndhI 576 [120719:121294](-) ndhJ 477 [64582:65058](-) ndhK 771 [65154:65924](-) petA 999 [76665:77663](+) petG 117 [80742:80858](+) petL 108 [80515:80622](+) psaA 2253 [56273:58525](-) psaB 2205 [54043:56247](-) psaC 246 [118874:119119](-) psaI 111 [73625:73735](+) psaJ 129 [81561:81689](+) psaM 99 [24646:24744](-) psbA 1062 [15430:16491](-) psbB 1527 [86605:88131](+) psbC 1422 [48493:49914](-) psbD 1062 [49862:50923](-) psbE 252 [79207:79458](-) psbF 120 [79078:79197](-) psbH 225 [88792:89016](+) psbI 111 [24136:24246](+) psbJ 123 [78704:78826](-) psbK 177 [23270:23446](+) psbL 117 [78939:79055](-) psbM 105 [44746:44850](-) psbN 132 [88577:88708](-) psbT 108 [88371:88478](+) psbZ 189 [47114:47302](-) rbcL 1428 [70326:71753](+) rpl14 369 [95009:95377](-) rpl16 438 [96747:96755](-) [95566:95994](-) rpl2 834 [99416:99814](-) [98301:98735](-) rpl20 348 [82581:82928](-) rpl21 357 [113168:113524](+) rpl22 396 [97576:97971](-) rpl23 273 [99838:100110](-) rpl32 180 [113701:113880](+) rpl33 201 [81864:82064](+) rpl36 114 [93630:93743](-) rpoA 1026 [92111:93136](-) rpoB 3213 [39412:42624](-) rpoC1 2058 [38953:39384](-) [36686:38311](-) rpoC2 4230 [32325:36554](-) rps11 393 [93167:93559](-) rps12 372 [83841:83954](-) [544:775](+) [1304:1329](+) rps14 303 [53552:53854](-) rps15 267 [124690:124956](-) rps16 255 [20988:21029](-) [20005:20217](-) rps18 228 [82134:82361](+) rps19 279 [97989:98267](-) rps2 726 [31465:32190](-) rps3 657 [96896:97552](-) rps4 621 [61635:62255](-) rps8 399 [94233:94631](-) ycf12 102 [25021:25122](+) ycf2 7332 [7144:14475](-) ycf3 543 [60586:60711](-) [59676:59903](-) [58858:59046](-) ycf4 555 [74157:74711](+) 36 tRNA genes (28 are unique) Genes Location trnL-CAA [5298:5378](+) trnH-GUG [14754:14827](-) trnK-UUU [19387:19423](-) [16928:16969](-) trnQ-UUG [22900:22971](-) trnS-CGA [23828:23912](+) trnS-GCU [24302:24389](-) trnR-UCU [26309:26378](+) trnC-GCA [42923:42993](+) trnD-GUC [45684:45757](+) trnY-GUA [45841:45922](-) trnE-UUC [46054:46126](-) trnG-UCC [46798:46868](-) trnS-CGA_copy2 [47658:47741](+) trnT-GGU [52178:52249](-) trnfM-CAU [53355:53429](-) trnS-GCU_copy2 [61171:61256](+) trnT-GGU_copy2 [62495:62558](-) trnF-GAA [64040:64112](+) trnV-UAC [67373:67409](-) [66760:66796](-) trnM-CAU [67564:67636](+) trnR-CCG [71871:71943](+) trnW-CCA [80991:81064](-) trnP-UGG [81263:81336](-) trnI-CAU [100329:100402](-) trnV-GAC [101623:101694](+) trnI-GAU [103660:103701](+) [104633:104667](+) trnA-UGC [104738:104775](+) [105551:105585](+) trnR-ACG [109351:109424](+) trnN-GUU [110049:110120](-) trnP-GGG [115602:115675](-) trnL-UAG [115806:115885](+) trnN-GUU_copy2 [133566:133637](+) trnR-ACG_copy2 [134262:134335](-) trnA-UGC_copy2 [138911:138948](-) [138101:138135](-) trnI-GAU_copy2 [139985:140026](-) [139019:139053](-) trnV-GAC_copy2 [141992:142063](-) 8 rRNA genes (4 are unique) Genes Location rrn16 [101907:103402](+) rrn23 [105732:108532](+) rrn4.5 [108647:108749](+) rrn5 [109008:109126](+) rrn5_copy2 [134560:134678](-) rrn4.5_copy2 [134937:135039](-) rrn23_copy2 [135145:137945](-) rrn16_copy2 [140280:141775](-) This genome has 15 genes with intron(s). Details are as follows: 12 gene(s) have 1 intron(s) Genes Exons ndhB [2201:2923](+) [3644:4405](+) rps16 [20988:21029](-) [20005:20217](-) rpoC1 [38953:39384](-) [36686:38311](-) rpl16 [96747:96755](-) [95566:95994](-) rpl2 [99416:99814](-) [98301:98735](-) ndhA [122809:123366](-) [121384:121935](-) trnK-UUU [19387:19423](-) [16928:16969](-) trnV-UAC [67373:67409](-) [66760:66796](-) trnI-GAU [103660:103701](+) [104633:104667](+) trnA-UGC [104738:104775](+) [105551:105585](+) trnA-UGC_copy2 [138911:138948](-) [138101:138135](-) trnI-GAU_copy2 [139985:140026](-) [139019:139053](-) 3 gene(s) have 2 intron(s) Genes Exons rps12 [83841:83954](-) [544:775](+) [1304:1329](+) ycf3 [60586:60711](-) [59676:59903](-) [58858:59046](-) clpP [86101:86169](-) [85106:85396](-) [84318:84572](-)