1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhB_copy2, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl2, rpl23, rpl23_copy2, rpl2_copy2, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps12_copy2, rps14, rps15, rps18, rps19, rps19_copy2, rps2, rps3, rps4, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor None Conserved open reading frames ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome rpl20, rpl22 Small subunit of ribosome rps16, rps7 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf2 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (1/2) [11469:12023](-) clpP (1/3) [26825:27538](+) ndhA (2/2) [123222:123774](-) [121603:122141](-) ndhB (2/2) [94470:95192](-) [93027:93782](-) ndhB_copy2 (2/2) [141789:142511](+) [143199:143954](+) petB (2/2) [76495:76500](+) [77279:77920](+) petD (2/2) [78113:78120](+) [78956:79430](+) rpl16 (2/2) [84520:84528](-) [83023:83421](-) rpl2 (2/2) [87258:87656](-) [86112:86546](-) rpl2_copy2 (2/2) [149325:149723](+) [150435:150869](+) rpoC1 (2/2) [22196:22627](-) [19795:21429](-) rps12 (3/3) [27723:27836](+) [140087:140318](+) [140855:140886](+) rps12_copy2 (3/3) [27723:27836](+) [96663:96894](-) [96095:96126](-) ycf3 (3/3) [54277:54402](+) [55149:55376](+) [56073:56225](+) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon rps19 GTG ndhD ACG rps19_copy2 GTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 122 genes (106 unique genes). Including: 77 protein-coding genes (72 are unique) 37 tRNA genes (30 are unique) 8 rRNA genes (4 are unique) Details are as follows: 77 protein-coding genes (72 are unique) Genes Length Location accD 2442 [39252:41693](-) atpA 1536 [9885:11420](-) atpB 1497 [45598:47094](-) atpE 402 [45200:45601](-) atpF 555 [11469:12023](-) atpH 246 [12566:12811](-) atpI 744 [13433:14176](-) ccsA 984 [115906:116889](+) cemA 687 [36275:36961](-) clpP 714 [26825:27538](+) matK 1512 [2031:3542](-) ndhA 1092 [123222:123774](-) [121603:122141](-) ndhB 1479 [94470:95192](-) [93027:93782](-) ndhB_copy2 1479 [141789:142511](+) [143199:143954](+) ndhC 363 [48440:48802](+) ndhD 1503 [117178:118680](-) ndhE 306 [119337:119642](-) ndhF 2232 [111985:114216](-) ndhG 534 [119890:120423](-) ndhH 1188 [123776:124963](-) ndhI 501 [121021:121521](-) ndhJ 477 [49646:50122](+) ndhK 684 [48854:49537](+) petA 963 [35075:36037](-) petB 648 [76495:76500](+) [77279:77920](+) petD 483 [78113:78120](+) [78956:79430](+) petG 114 [31713:31826](-) petL 96 [31974:32069](-) petN 90 [72195:72284](-) psaA 2253 [57265:59517](+) psaB 2205 [59543:61747](+) psaC 246 [118816:119061](-) psaI 114 [38423:38536](-) psaJ 135 [30661:30795](-) psbA 1062 [232:1293](+) psbB 1527 [73913:75439](+) psbC 1464 [63945:65408](-) psbD 1062 [65314:66375](-) psbE 252 [33052:33303](+) psbF 120 [33313:33432](+) psbH 213 [76058:76270](+) psbI 111 [7096:7206](+) psbJ 120 [33721:33840](+) psbK 186 [6466:6651](+) psbL 117 [33459:33575](+) psbM 105 [70702:70806](+) psbN 132 [75806:75937](-) psbT 108 [75620:75727](+) psbZ 189 [63061:63249](-) rbcL 1428 [42160:43587](-) rpl14 369 [82500:82868](-) rpl16 408 [84520:84528](-) [83023:83421](-) rpl2 834 [87258:87656](-) [86112:86546](-) rpl23 297 [87661:87957](-) rpl23_copy2 297 [149024:149320](+) rpl2_copy2 834 [149325:149723](+) [150435:150869](+) rpl32 174 [114757:114930](+) rpl33 207 [29879:30085](-) rpl36 114 [81216:81329](-) rpoA 1020 [79585:80604](-) rpoB 3213 [22656:25868](-) rpoC1 2067 [22196:22627](-) [19795:21429](-) rpoC2 4188 [15459:19646](-) rps11 411 [80671:81081](-) rps12 378 [27723:27836](+) [140087:140318](+) [140855:140886](+) rps12_copy2 378 [27723:27836](+) [96663:96894](-) [96095:96126](-) rps14 303 [61892:62194](+) rps15 261 [125060:125320](-) rps18 408 [29275:29682](-) rps19 279 [85767:86045](-) rps19_copy2 279 [150936:151214](+) rps2 711 [14404:15114](-) rps3 696 [84723:85418](-) rps4 597 [52826:53422](+) rps8 414 [81873:82286](-) ycf3 507 [54277:54402](+) [55149:55376](+) [56073:56225](+) ycf4 546 [37427:37972](-) 37 tRNA genes (30 are unique) Genes Location trnH-GUG [1547:1620](+) trnK-UUU [4263:4299](-) [1681:1716](-) trnQ-UUG [6019:6089](-) trnS-GCU [7331:7418](-) trnG-UCC [8983:9030](-) [8244:8266](-) trnR-UCU [9596:9667](+) trnP-UGG [31239:31312](+) trnW-CCA [31523:31595](+) trnV-UAC [44633:44671](-) [43994:44028](-) trnM-CAU [44859:44931](+) trnF-GAA [50899:50971](-) trnL-UAA [51821:51855](-) [51201:51250](-) trnT-UGU [52364:52436](+) trnS-GGA [53704:53790](-) trnfM-CAU [62383:62455](+) trnG-GCC [62604:62673](-) trnS-UGA [63603:63689](+) trnT-GGU [67954:68025](-) trnE-UUC [68893:68965](+) trnY-GUA [69025:69108](+) trnD-GUC [69604:69677](+) trnC-GCA [72652:72721](-) trnI-CAU [88123:88196](-) trnL-CAA [92352:92432](-) trnV-GAC [98715:98786](+) trnI-GAU [100787:100828](+) [101778:101812](+) trnA-UGC [101877:101914](+) [102715:102749](+) trnR-ACG [106531:106604](+) trnN-GUU [106812:106883](-) trnL-UAG [115712:115791](+) trnN-GUU_copy2 [130098:130169](+) trnR-ACG_copy2 [130377:130450](-) trnA-UGC_copy2 [135067:135104](-) [134232:134266](-) trnI-GAU_copy2 [136153:136194](-) [135169:135203](-) trnV-GAC_copy2 [138195:138266](-) trnL-CAA_copy2 [144549:144629](+) trnI-CAU_copy2 [148785:148858](+) 8 rRNA genes (4 are unique) Genes Location rrn16S [99019:100510](+) rrn23S [102903:105723](+) rrn4.5S [105823:105925](+) rrn5S [106156:106276](+) rrn5S_copy2 [130705:130825](-) rrn4.5S_copy2 [131056:131158](-) rrn23S_copy2 [131257:134078](-) rrn16S_copy2 [136471:137962](-) This genome has 20 genes with intron(s). Details are as follows: 17 gene(s) have 1 intron(s) Genes Exons rpoC1 [22196:22627](-) [19795:21429](-) petB [76495:76500](+) [77279:77920](+) petD [78113:78120](+) [78956:79430](+) rpl16 [84520:84528](-) [83023:83421](-) rpl2 [87258:87656](-) [86112:86546](-) ndhB [94470:95192](-) [93027:93782](-) ndhA [123222:123774](-) [121603:122141](-) ndhB_copy2 [141789:142511](+) [143199:143954](+) rpl2_copy2 [149325:149723](+) [150435:150869](+) trnK-UUU [4263:4299](-) [1681:1716](-) trnG-UCC [8983:9030](-) [8244:8266](-) trnV-UAC [44633:44671](-) [43994:44028](-) trnL-UAA [51821:51855](-) [51201:51250](-) trnI-GAU [100787:100828](+) [101778:101812](+) trnA-UGC [101877:101914](+) [102715:102749](+) trnA-UGC_copy2 [135067:135104](-) [134232:134266](-) trnI-GAU_copy2 [136153:136194](-) [135169:135203](-) 3 gene(s) have 2 intron(s) Genes Exons rps12 [27723:27836](+) [140087:140318](+) [140855:140886](+) rps12_copy2 [27723:27836](+) [96663:96894](-) [96095:96126](-) ycf3 [54277:54402](+) [55149:55376](+) [56073:56225](+)