1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase None Subunits of cytochrome b/f complex None Subunits of photosystem I None Subunits of photosystem II None Large subunit of ribosome rpl14, rpl16, rpl2, rpl20, rpl22, rpl23, rpl32, rpl33, rpl36 Small subunit of ribosome rps11, rps14, rps15, rps18, rps19, rps19_copy2, rps2, rps3, rps4, rps7, rps8 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene None Envelop membrane protein None Maturase matK, matK_copy2 Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf15, ycf2 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhA, ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaC, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome None Small subunit of ribosome rps12, rps16 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene ccsA Envelop membrane protein cemA Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf4 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 clpP (3/3) [27150:27220](-) [26111:26404](-) [25256:25481](-) rpl16 (2/2) [30926:30934](-) [29647:30045](-) rpl2 (2/2) [34015:34423](-) [32887:33317](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon None None 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 57 genes (52 unique genes). Including: 28 protein-coding genes (26 are unique) 26 tRNA genes (23 are unique) 3 rRNA genes (3 are unique) Details are as follows: 28 protein-coding genes (26 are unique) Genes Length Location accD 1482 [17846:19327](+) clpP 591 [27150:27220](-) [26111:26404](-) [25256:25481](-) infA 234 [28218:28451](-) matK 1545 [35689:37233](+) matK_copy2 1545 [70613:72157](-) rpl14 369 [29153:29521](-) rpl16 408 [30926:30934](-) [29647:30045](-) rpl2 840 [34015:34423](-) [32887:33317](-) rpl20 387 [23836:24222](-) rpl22 471 [31768:32238](-) rpl23 210 [59189:59398](-) rpl32 174 [68556:68729](-) rpl33 201 [22982:23182](+) rpl36 114 [28005:28118](-) rps11 417 [27486:27902](-) rps14 303 [9670:9972](-) rps15 264 [67124:67387](+) rps18 306 [23343:23648](+) rps19 279 [32555:32833](-) rps19_copy2 279 [75013:75291](+) rps2 723 [2175:2897](-) rps3 651 [31133:31783](-) rps4 606 [12776:13381](-) rps7 468 [50409:50876](-) rps8 399 [28571:28969](-) ycf1 5415 [61280:66694](+) ycf15 159 [46894:47052](+) ycf2 6948 [39760:46707](+) 26 tRNA genes (23 are unique) Genes Location trnQ-UUG [638:709](-) trnS-GCU [1560:1647](-) trnC-GCA [5461:5531](+) trnD-GUC [5670:5743](-) trnY-GUA [5857:5939](-) trnE-UUC [6003:6075](-) trnT-GGU [6253:6324](+) trnS-UGA [8690:8782](-) trnG-GCC [9230:9300](+) trnM-CAU [9454:9527](-) trnS-GGA [12397:12483](+) trnT-UGU [13754:13826](-) trnL-UAA [13928:13962](+) [14495:14544](+) trnF-GAA [14913:14985](+) trnM-CAU_copy2 [15128:15200](+) trnW-CCA [21746:21819](-) trnP-UGG [22031:22104](-) trnK-UUU [34973:35009](+) [37462:37497](+) trnH-GUG [39290:39363](+) trnM-CAU_copy3 [39598:39671](-) trnL-CAA [47311:47391](-) trnV-GAC [53286:53357](+) trnR-ACG [60105:60178](+) trnN-GUU [60738:60809](-) trnL-UAG [67944:68023](-) trnK-UUU_copy2 [72837:72873](-) [70349:70384](-) 3 rRNA genes (3 are unique) Genes Location rrn16S [53583:55073](+) rrn23S [56506:59329](+) rrn5S [59753:59883](+) This genome has 6 genes with intron(s). Details are as follows: 5 gene(s) have 1 intron(s) Genes Exons rpl16 [30926:30934](-) [29647:30045](-) rpl2 [34015:34423](-) [32887:33317](-) trnL-UAA [13928:13962](+) [14495:14544](+) trnK-UUU [34973:35009](+) [37462:37497](+) trnK-UUU_copy2 [72837:72873](-) [70349:70384](-) 1 gene(s) have 2 intron(s) Genes Exons clpP [27150:27220](-) [26111:26404](-) [25256:25481](-)