1. Annotated protein coding genes: Group of genes Name of genes Subunits of ATP synthase atpA, atpB, atpE, atpF, atpH, atpI Subunits of NADH-dehydrogenase ndhB_1, ndhB_2, ndhC, ndhJ, ndhK Subunits of cytochrome b/f complex petA, petB, petD, petG, petL, petN Subunits of photosystem I psaA, psaB, psaI, psaJ Subunits of photosystem II psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ, ycf3 Large subunit of ribosome rpl14, rpl16, rpl20, rpl22, rpl23_1, rpl23_2, rpl2_1, rpl2_2, rpl33, rpl36 Small subunit of ribosome rps11, rps12, rps14, rps16, rps18, rps19, rps2, rps3, rps4, rps7_1, rps7_2, rps8 DNA dependent RNA polymerase rpoA, rpoB, rpoC1, rpoC2 Subunit of rubisco rbcL c-type cytochrom synthesis gene None Envelop membrane protein cemA Maturase matK Protease clpP Subunit of Acetyl-CoA-carboxylase accD Translational initiation factor infA Conserved open reading frames ycf1, ycf2_1, ycf2_2, ycf4 Other genes None Possible missing protein coding genes: Group of genes Name of genes Subunits of ATP synthase None Subunits of NADH-dehydrogenase ndhA, ndhB, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI Subunits of cytochrome b/f complex None Subunits of photosystem I psaC Subunits of photosystem II None Large subunit of ribosome rpl2, rpl23, rpl32 Small subunit of ribosome rps15, rps7 DNA dependent RNA polymerase None Subunit of rubisco None c-type cytochrom synthesis gene ccsA Envelop membrane protein None Maturase None Protease None Subunit of Acetyl-CoA-carboxylase None Translational initiation factor None Conserved open reading frames ycf15, ycf2 Other genes None 2. Multicopy genes with different lengths: Genes Length Location None None None 3. Common intron-contained genes: Genes exons exon1 exon2 exon3 atpF (2/2) [106331:106491](-) [105201:105609](-) clpP (3/3) [27281:27351](-) [26215:26506](-) [25351:25578](-) ndhB_1 (2/2) [51559:52334](-) [50127:50883](-) ndhB_2 (2/2) [79941:80716](+) [81392:82148](+) petB (1/2) [30985:31665](+) petD (1/2) [32548:33075](+) rpl16 (1/2) [36591:37001](-) rpl2_1 (2/2) [40852:41243](-) [39754:40222](-) rpl2_2 (2/2) [91032:91423](+) [92053:92521](+) rpoC1 (2/2) [116831:117283](-) [114464:116080](-) rps12 (3/3) [25087:25200](-) [53762:53993](-) [53200:53225](-) rps16 (2/2) [98938:98977](-) [97839:98065](-) ycf3 (3/3) [138920:139050](-) [137961:138186](-) [137047:137199](-) ### The exon column shows the number of (actual exons/expected exons). ### 4. Genes with internal stop codon: None 5. Genes with nonstandard start codon: Genes Start codon psbL CTG psbT ATC psbH GTG petB ATA petD ATC rpl16 ATC rps19 GTG ycf1 GTG psbI ATC petN ATA psbC GTG 6. Genes with nonstandard stop codon: Genes Stop codon None None 7. Conclusion This genome has 116 genes (108 unique genes). Including: 73 protein-coding genes (73 are unique) 35 tRNA genes (30 are unique) 8 rRNA genes (5 are unique) Details are as follows: 73 protein-coding genes (73 are unique) Genes Length Location accD 1542 [12423:13964](+) atpA 1524 [103619:105142](-) atpB 1497 [8051:9547](-) atpE 402 [7653:8054](-) atpF 570 [106331:106491](-) [105201:105609](-) atpH 246 [106896:107141](-) atpI 744 [108258:109001](-) cemA 690 [16230:16919](+) clpP 591 [27281:27351](-) [26215:26506](-) [25351:25578](-) infA 234 [35121:35354](-) matK 1515 [94701:96215](-) ndhB_1 1533 [51559:52334](-) [50127:50883](-) ndhB_2 1533 [79941:80716](+) [81392:82148](+) ndhC 363 [5094:5456](-) ndhJ 477 [3775:4251](-) ndhK 858 [4357:5214](-) petA 963 [17150:18112](+) petB 681 [30985:31665](+) petD 528 [32548:33075](+) petG 114 [21473:21586](+) petL 96 [21215:21310](+) petN 99 [122332:122430](+) psaA 2253 [134077:136329](-) psaB 2205 [131847:134051](-) psaI 111 [14675:14785](+) psaJ 135 [22422:22556](+) psbA 1062 [93081:94142](-) psbB 1527 [27794:29320](+) psbC 1452 [128281:129732](+) psbD 1062 [127302:128363](+) psbE 252 [19649:19900](-) psbF 120 [19520:19639](-) psbH 237 [29892:30128](+) psbI 162 [101494:101655](+) psbJ 123 [19118:19240](-) psbK 186 [100939:101124](+) psbL 198 [19381:19578](-) psbM 105 [123586:123690](-) psbN 132 [29676:29807](-) psbT 117 [29499:29615](+) psbZ 189 [130435:130623](+) rbcL 1428 [10322:11749](+) rpl14 369 [36080:36448](-) rpl16 411 [36591:37001](-) rpl20 387 [23925:24311](-) rpl22 480 [38868:39347](-) rpl23_1 282 [41262:41543](-) rpl23_2 282 [90732:91013](+) rpl2_1 861 [40852:41243](-) [39754:40222](-) rpl2_2 861 [91032:91423](+) [92053:92521](+) rpl33 207 [22998:23204](+) rpl36 114 [34892:35005](-) rpoA 1005 [33282:34286](-) rpoB 3213 [117289:120501](-) rpoC1 2070 [116831:117283](-) [114464:116080](-) rpoC2 4155 [110144:114298](-) rps11 417 [34361:34777](-) rps12 372 [25087:25200](-) [53762:53993](-) [53200:53225](-) rps14 303 [131404:131706](-) rps16 267 [98938:98977](-) [97839:98065](-) rps18 306 [23376:23681](+) rps19 279 [39417:39695](-) rps2 711 [109204:109914](-) rps3 657 [38227:38883](-) rps4 606 [303:908](-) rps7_1 468 [52679:53146](-) rps7_2 468 [79129:79596](+) rps8 405 [35476:35880](-) ycf1 1419 [66103:67521](-) ycf2_1 6933 [41871:48803](+) ycf2_2 6933 [83472:90404](-) ycf3 510 [138920:139050](-) [137961:138186](-) [137047:137199](-) ycf4 555 [15203:15757](+) 35 tRNA genes (30 are unique) Genes Location trnT-UGU [1254:1328](-) trnL-UAA [2046:2080](+) [2582:2631](+) trnF-GAA [3009:3082](+) trnM-CAU [7339:7411](+) trnW [21710:21783](-) trnP [21957:22032](-) trnI-CAU [41708:41782](-) trnL-CAA [49462:49544](-) trnV-GAC [55834:55905](+) trnE [57908:57939](+) [58887:58926](+) trnA [58991:59027](+) [59849:59884](+) trnR-ACG [63676:63750](+) trnN-GUU [64357:64430](-) trnN-GUU_copy2 [67845:67918](+) trnR-ACG_copy2 [68525:68599](-) trnA-UGC [73248:73284](-) [72391:72425](-) trnE-UUC [74336:74367](-) [73349:73387](-) trnV-GAC_copy2 [76370:76441](-) trnL-CAA_copy2 [82731:82813](+) trnI [90493:90567](+) trnH-GUG [92618:92692](-) trnK-UUU [96939:96975](-) [94379:94412](-) trnQ-UUG [100506:100577](-) trnS-GCU [101701:101788](-) trnS-CGA [102493:102524](+) [103205:103264](+) trnR-UCU [103437:103508](+) trnC [121781:121851](+) trnD-GUC [124851:124927](-) trnY [125041:125127](-) trnE_copy2 [125190:125264](-) trnT-GGU [126101:126174](+) trnS-UGA [129970:130062](-) trnG [130918:130989](+) trnfM [131176:131249](-) trnS-GGA [139912:139998](+) 8 rRNA genes (5 are unique) Genes Location rrn16S [56124:57614](+) rrn23S [60037:62846](+) rrn4.5S [62945:63047](+) rrn5S [63304:63424](+) rrn5 [68851:68971](-) rrn4.5S_copy2 [69228:69330](-) rrn23S_copy2 [69429:72238](-) rrn16S_copy2 [74661:76151](-) This genome has 17 genes with intron(s). Details are as follows: 14 gene(s) have 1 intron(s) Genes Exons rpl2_1 [40852:41243](-) [39754:40222](-) ndhB_1 [51559:52334](-) [50127:50883](-) ndhB_2 [79941:80716](+) [81392:82148](+) rpl2_2 [91032:91423](+) [92053:92521](+) rps16 [98938:98977](-) [97839:98065](-) atpF [106331:106491](-) [105201:105609](-) rpoC1 [116831:117283](-) [114464:116080](-) trnL-UAA [2046:2080](+) [2582:2631](+) trnE [57908:57939](+) [58887:58926](+) trnA [58991:59027](+) [59849:59884](+) trnA-UGC [73248:73284](-) [72391:72425](-) trnE-UUC [74336:74367](-) [73349:73387](-) trnK-UUU [96939:96975](-) [94379:94412](-) trnS-CGA [102493:102524](+) [103205:103264](+) 3 gene(s) have 2 intron(s) Genes Exons rps12 [25087:25200](-) [53762:53993](-) [53200:53225](-) clpP [27281:27351](-) [26215:26506](-) [25351:25578](-) ycf3 [138920:139050](-) [137961:138186](-) [137047:137199](-)